Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,346,373 – 7,346,477 |
Length | 104 |
Max. P | 0.745970 |
Location | 7,346,373 – 7,346,477 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 92.95 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -20.55 |
Energy contribution | -21.55 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.87 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7346373 104 + 22224390 AAUAAUAUAAACUCUCCUUUGAUAAAGAAAUAUGGUAAGUUGUCAAUAAAUAGCACGCGUUGCUCUUCUCAUAAUACUUUUGCUAUAUUCUUUCAGGAGAAGCA ............((((((.....((((((.((((((((((...........((((.....))))...........)))..))))))))))))).)))))).... ( -19.45) >DroSec_CAF1 95021 104 + 1 AAUGAUAUAAGCUCUCCAUUGAUCAAGUAAUAUGGUAAGUUGUCAAUAACUAGCUCGCGUUGCUCAUCUCAUAAGACUUUUGCUAUAUUAUUUCAGGAGAAGCA ..........(((((((..(((...((((((((((((((..(((.......(((.......)))..........))).))))))))))))))))))))).))). ( -25.53) >DroSim_CAF1 94898 104 + 1 AAUGAUAUAAGCUCUCCAUUGAUCAAGUAAUAUGGUAAGUUGUCAAUUAAUAGCUCGCGUUGCUCAUCUCAUAAGACUUUUGCUAUAUUAUUUCAGGAGAAGCA ..........(((((((..(((...((((((((((((((..(((.......(((.......)))..........))).))))))))))))))))))))).))). ( -25.53) >consensus AAUGAUAUAAGCUCUCCAUUGAUCAAGUAAUAUGGUAAGUUGUCAAUAAAUAGCUCGCGUUGCUCAUCUCAUAAGACUUUUGCUAUAUUAUUUCAGGAGAAGCA ..........(((((((..(((...((((((((((((((((..........(((.......)))..........))))..))))))))))))))))))).))). (-20.55 = -21.55 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:01 2006