Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,251,692 – 7,251,782 |
Length | 90 |
Max. P | 0.511995 |
Location | 7,251,692 – 7,251,782 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -16.17 |
Energy contribution | -15.62 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.20 |
Mean z-score | -1.32 |
Structure conservation index | 0.60 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7251692 90 + 22224390 ----------------UGUGUAUGUAUGUUGAAGUCCUGU--AGUCCUGGGUCCUUGCUUGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA ----------------(((((((.....(((((.((..((--(...((((((.(......)..))))))...)))..)).(((....))).))))))))))))..... ( -22.70) >DroSec_CAF1 1993 86 + 1 ----------------UGUGUGUGUGUGUUGAAGUCCUGU--UGUCCUGGGUCCU----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA ----------------..((((((..(.(((((...(((.--((..((((((...----....)))))).))...)))..(((....))).))))))..))))))... ( -25.50) >DroSim_CAF1 429 86 + 1 ----------------UGUGUGUGUGUGUUGAAGUCCUGU--UGUCCUGGGUCCC----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA ----------------..((((((..(.(((((...(((.--((..((((((...----....)))))).))...)))..(((....))).))))))..))))))... ( -25.50) >DroEre_CAF1 7398 102 + 1 AGUGCACGAGUGUGGGUGUGAGUGUAUGCUGAAGUCCUGU--AGUCCUGGGUCUU----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA .((((((((.((..((..(.(((....))).)...))..)--).))((((((...----....))))))........((((((....))).)))..))))))...... ( -35.20) >DroYak_CAF1 24872 92 + 1 UGUGUAUAAUUGUG----------UGUGUUGAAGUGCUGU--AGUCCUGGGCCCU----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA .........(((((----------(((((((((...((((--(...((((((...----....))))))...)).)))..(((....))).))))).))))))))).. ( -27.40) >DroAna_CAF1 3978 71 + 1 ---------------------------------GUCCUGCUCGGGCCCGGGUCCU----UGCUGUCCGGGCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA ---------------------------------.....(((((((((((((.(..----....)))))))).........(((....)))..)))))).......... ( -24.70) >consensus ________________UGUGUGUGUGUGUUGAAGUCCUGU__AGUCCUGGGUCCU____UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA .................................(..((........((((((...........))))))........((((((....))).))).))..)........ (-16.17 = -15.62 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:18 2006