Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,221,147 – 7,221,249 |
Length | 102 |
Max. P | 0.849019 |
Location | 7,221,147 – 7,221,249 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.22 |
Mean single sequence MFE | -15.13 |
Consensus MFE | -14.92 |
Energy contribution | -14.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.57 |
Structure conservation index | 0.99 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7221147 102 - 22224390 CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUUUUGUAUUUUUUUUUUUUGCCUGGCGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC ..........(((((.......................................))))).(((.....)))....((((.((((.....)))).)))).... ( -15.33) >DroSec_CAF1 28824 92 - 1 CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUU----------UUUUUUUGCCUGGUGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC .....(((((.........(((.(((.......----------..........))).))).......)))))...((((.((((.....)))).)))).... ( -14.32) >DroSim_CAF1 29234 90 - 1 CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUU------------UUUUUGCCUGGCGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC ..........(((((..................------------.........))))).(((.....)))....((((.((((.....)))).)))).... ( -15.73) >consensus CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUU__________UUUUUUUGCCUGGCGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC ..........(((((.......................................))))).(((.....)))....((((.((((.....)))).)))).... (-14.92 = -14.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:09 2006