Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,219,548 – 7,219,686 |
Length | 138 |
Max. P | 0.860144 |
Location | 7,219,548 – 7,219,657 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -10.62 |
Energy contribution | -12.06 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.16 |
Mean z-score | -2.16 |
Structure conservation index | 0.52 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7219548 109 + 22224390 CUUUGCCUCAACAGGAGCGCAACAAAUUAAAUGUCAAACGACAAGGGGUCC--AGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC- ..(((((((.....))).)))).........((((....))))..((((((--.......................((.......))..((((....))))....))))))- ( -22.70) >DroPse_CAF1 38214 109 + 1 UUUCUGCCCCACAGAAGCGCAACAAAUUAAAUGUCAAACUACAACGGAACCC--CC-CCAAAAAAAAAGAAAUAAAGAAAAGUUCUCACUUUCACAAUGGUAGCAGAGCCAG .((((((.(((..................................((.....--..-)).........((((...(((.....)))...))))....)))..)))))).... ( -12.20) >DroSec_CAF1 27275 100 + 1 CUUUGCCUCAA-----------CAAAUUAAAUGUCAAACGACAAGGGGUCCACAGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC- ....((((...-----------.........((((....))))....((((...))))........................((((...((((....))))))))))))..- ( -19.30) >DroSim_CAF1 27643 111 + 1 CUUUGCCUCAACAGGAGCGCAACAAAUUAAAUGUCAAACGACAAGGGGUCCACAGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC- ..(((((((.....))).)))).........((((....))))..((((((.........................((.......))..((((....))))....))))))- ( -22.70) >DroEre_CAF1 29240 108 + 1 CU-UGCCCCAAAAGGAGAGCAACAAAUUAAAUGUCAAACGACAAGGGGUCCA-AGGACAAAUAAAAAAUAAAUAACGCA-CAUUCUCACUUCGGAAACGAAAGAAGGGCUC- ..-.((((......((((((...........((((....))))....(((..-..)))..................)).-...))))..((((....))))....))))..- ( -25.60) >consensus CUUUGCCUCAACAGGAGCGCAACAAAUUAAAUGUCAAACGACAAGGGGUCCA_AGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC_ ....((((.......................((((....))))....(((.....)))........................((((...((((....))))))))))))... (-10.62 = -12.06 + 1.44)
Location | 7,219,587 – 7,219,686 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -23.86 |
Consensus MFE | -12.36 |
Energy contribution | -12.92 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.24 |
Mean z-score | -2.26 |
Structure conservation index | 0.52 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.860144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7219587 99 + 22224390 GACAAGGGGUCC--AGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC-----CUGU-------CGUCUUUUCUUCGCCUUGUAUUAAA .((((((.(...--(((((........................((((...((((....)))))))).(((..-----..))-------)))))).....).))))))...... ( -23.70) >DroPse_CAF1 38253 105 + 1 UACAACGGAACCC--CC-CCAAAAAAAAAGAAAUAAAGAAAAGUUCUCACUUUCACAAUGGUAGCAGAGCCAGGAUAUUGGGGGAGCCAGACUUUU-----UCUUGUAUUAAA ((((..((....(--((-((((.......((((...(((.....)))...))))....((((......)))).....)))))))..))(((.....-----)))))))..... ( -21.70) >DroSec_CAF1 27303 101 + 1 GACAAGGGGUCCACAGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC-----CUGU-------CGUCUUUUCUUCGCCUUGUAUUAAA .((((((.((((...)))).................((((..........((((....)))).(((((((..-----....-------.))))))).))))))))))...... ( -24.60) >DroSim_CAF1 27682 101 + 1 GACAAGGGGUCCACAGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC-----CUGU-------CGUCUUUUCUUCGCCUUGUAUUAAA .((((((.((((...)))).................((((..........((((....)))).(((((((..-----....-------.))))))).))))))))))...... ( -24.60) >DroEre_CAF1 29278 99 + 1 GACAAGGGGUCCA-AGGACAAAUAAAAAAUAAAUAACGCA-CAUUCUCACUUCGGAAACGAAAGAAGGGCUC-----CUGU-------CGCCUUUUCUUCGCCUUGUAUUAAA .((((((.(((..-..))).....................-........(....)...((((..((((((..-----....-------.))))))..))))))))))...... ( -24.70) >consensus GACAAGGGGUCCA_AGGACAAAUAAAAAAUAAAUAACGAAAAAUUCUCACUUCGGAAACGAAAGAAGGGCUC_____CUGU_______CGUCUUUUCUUCGCCUUGUAUUAAA .((((((.(((.....)))........................((((...((((....))))...))))................................))))))...... (-12.36 = -12.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:07 2006