Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 907,937 – 908,042 |
Length | 105 |
Max. P | 0.939297 |
Location | 907,937 – 908,042 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.80 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -15.97 |
Energy contribution | -16.19 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.10 |
Mean z-score | -1.55 |
Structure conservation index | 0.78 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 907937 105 + 22224390 UGCAACUUAACUGUGUUUGGUCCAUUGCAACUUAAGUGUGUAAUGUUACACAUUGGACUAAAUCAAA-AGAACUUUAUUUCGUUCGUUUGGGUAGCACCCUACUAA (((.((((((.((.((((((((((...........(((((((....)))))))))))))))))))..-.((((........))))..)))))).)))......... ( -26.40) >DroSec_CAF1 22816 90 + 1 ---------------CUGAGUCCAUUGCAACUUAUCUGUGUAAUGUUACACCUUGGACUUAAUCAAA-AGAACUCUAAAUCGUUCGAUUGGGUAGCACCCUACGAA ---------------.((((((((.((.(((((((....)))).))).))...)))))))).((((.-.((((........))))..))))((((....))))... ( -19.60) >DroSim_CAF1 21518 91 + 1 ---------------CUCAGUCCAUUGCAACUUAUCUGUGUAAUGUUACACCUUGGACUUAAUAAAAAAAAACUCUAAAUCGUUCGAUUGGGUAGCACCCUACGAA ---------------...((((((.((.(((((((....)))).))).))...)))))).......................((((...(((.....)))..)))) ( -15.70) >consensus _______________CUCAGUCCAUUGCAACUUAUCUGUGUAAUGUUACACCUUGGACUUAAUCAAA_AGAACUCUAAAUCGUUCGAUUGGGUAGCACCCUACGAA ................((((((((.............(((((....)))))..))))))))........((((........))))....(((.....)))...... (-15.97 = -16.19 + 0.23)
Location | 907,937 – 908,042 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.80 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -19.92 |
Energy contribution | -19.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.40 |
Structure conservation index | 0.90 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 907937 105 - 22224390 UUAGUAGGGUGCUACCCAAACGAACGAAAUAAAGUUCU-UUUGAUUUAGUCCAAUGUGUAACAUUACACACUUAAGUUGCAAUGGACCAAACACAGUUAAGUUGCA ...((((((.....))).(((((((........)))).-..((.(((.(((((...((((((.(((......))))))))).))))).)))))..)))....))). ( -23.00) >DroSec_CAF1 22816 90 - 1 UUCGUAGGGUGCUACCCAAUCGAACGAUUUAGAGUUCU-UUUGAUUAAGUCCAAGGUGUAACAUUACACAGAUAAGUUGCAAUGGACUCAG--------------- ......(((.....)))(((((((.((........)).-))))))).((((((...((((((.(((......))))))))).))))))...--------------- ( -23.00) >DroSim_CAF1 21518 91 - 1 UUCGUAGGGUGCUACCCAAUCGAACGAUUUAGAGUUUUUUUUUAUUAAGUCCAAGGUGUAACAUUACACAGAUAAGUUGCAAUGGACUGAG--------------- ((((..(((.....)))...)))).......................((((((...((((((.(((......))))))))).))))))...--------------- ( -20.50) >consensus UUCGUAGGGUGCUACCCAAUCGAACGAUUUAGAGUUCU_UUUGAUUAAGUCCAAGGUGUAACAUUACACAGAUAAGUUGCAAUGGACUAAG_______________ ......(((.....)))....((((........))))...........(((((...((((((.(((......))))))))).)))))................... (-19.92 = -19.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:29 2006