Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,207,827 – 7,207,940 |
Length | 113 |
Max. P | 0.621557 |
Location | 7,207,827 – 7,207,940 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.55 |
Mean single sequence MFE | -26.35 |
Consensus MFE | -22.84 |
Energy contribution | -22.73 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.44 |
Structure conservation index | 0.87 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7207827 113 - 22224390 GCU--UCCA-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG ...--.((.-----((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))))......... ( -25.00) >DroPse_CAF1 20991 118 - 1 UCC--UCCAGCCAGCCGACUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG ..(--(((((((((....)))))).....((((((......))))))((((((((((..(((....)))........((((....))))....)))).))))))...))))......... ( -31.00) >DroSim_CAF1 16072 113 - 1 GCU--UCCA-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG ...--.((.-----((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))))......... ( -25.00) >DroEre_CAF1 17102 113 - 1 GCU--UCCG-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAACGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG (((--.((.-----..))..)))...........((((((((..((.((((((((((..(((....)))........((((....))))....)))).))))))..))...)))))))). ( -25.00) >DroYak_CAF1 18149 113 - 1 GCU--UCCA-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG ...--.((.-----((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))))......... ( -25.00) >DroAna_CAF1 17789 115 - 1 GCCUCUUCU-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG (((((....-----...(((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))...)))))........ ( -27.10) >consensus GCU__UCCA_____CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG ..............((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))........... (-22.84 = -22.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:00 2006