Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,201,731 – 7,201,862 |
Length | 131 |
Max. P | 0.997553 |
Location | 7,201,731 – 7,201,844 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 95.94 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -28.20 |
Energy contribution | -28.24 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.12 |
Structure conservation index | 0.90 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7201731 113 - 22224390 AA-AGGCAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGCGCGAGUUUUUCAAAUCUUUAUGUCCUUUGUUUGA ((-(((..((((((...((((((.((((((.((((.((((..(((....)))...)))))))).))))))........((....))))))))...))))))..)))))...... ( -31.20) >DroSec_CAF1 9603 113 - 1 AA-AGGUAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGGUGGAGGCCAUUUGGUUGCCUGACAUGAUGCGCGAGUUUUUCAAAUCUUUAUGUCCUUUGUUUGA ((-(((..((((((...(((((((.((((........((((((.(((((((....))))))).))))))........))).)...)))))))...))))))..)))))...... ( -32.49) >DroSim_CAF1 9731 113 - 1 AA-AGGUAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGCGCGAGUUUUUCAAAUCUUUAUGUCCUUUGUUUGA ((-(((..((((((...((((((.((((((.((((.((((..(((....)))...)))))))).))))))........((....))))))))...))))))..)))))...... ( -31.20) >DroEre_CAF1 9412 113 - 1 AG-AGGUAGUAGGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGCGCGAGUUUUUCAAAUCUUUAUGUCCUUUGUUUGA ((-(((..((((((...((((((.((((((.((((.((((..(((....)))...)))))))).))))))........((....))))))))...))))))..)))))...... ( -30.90) >DroYak_CAF1 11364 114 - 1 AGGCGGUGGCAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUGAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGCGCGAGUUUUUCACAUCUUUAUGUCCUUUGUUUGA ((((((.((((((((.(((((((.((((((.((((.((((..(((....)))...)))))))).))))))........((....)))))))))))))...))))..)))))).. ( -30.20) >consensus AA_AGGUAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGCGCGAGUUUUUCAAAUCUUUAUGUCCUUUGUUUGA ..........((((.((((((...((((((.((((.((((..(((....)))...)))))))).))))))((..(((.((....))...)))..)))))))).))))....... (-28.20 = -28.24 + 0.04)
Location | 7,201,765 – 7,201,862 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -16.39 |
Consensus MFE | -13.13 |
Energy contribution | -13.13 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.80 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7201765 97 + 22224390 GCAUCAUUUCAGGCAACCAAAUGGCCUCCAACAUCUUAUUACCACCUUACUUGCCUCUUUUCACGACCUUACUGCCU-UUUCAUCAACCAGUGAUGCU-------------- (((((.....((((((.....(((.................)))......))))))..............((((...-..........))))))))).-------------- ( -14.65) >DroSec_CAF1 9637 97 + 1 GCAUCAUGUCAGGCAACCAAAUGGCCUCCACCAUCUUAUUACCACCUUACUUGCCUCUUUUCACGACCUUACUACCU-UUUUAUCAACCAGUGAUGCU-------------- (((((((...((((((.....(((.................)))......))))))........((...........-.....)).....))))))).-------------- ( -13.72) >DroYak_CAF1 11398 112 + 1 GCAUCAUUUCAGGCAACCAAAUGGCCUCCAACAUCUUAUCACCACCUUACUUGCCUCUUUUCACGACCUUGCCACCGCCUUUAUCAACCAGUGAUGCCUGAAUGGUGAUAAC .(((((((.((((((.......(((...........................))).....((((..........................)))))))))))))))))..... ( -20.80) >consensus GCAUCAUUUCAGGCAACCAAAUGGCCUCCAACAUCUUAUUACCACCUUACUUGCCUCUUUUCACGACCUUACUACCU_UUUUAUCAACCAGUGAUGCU______________ (((((((...((((((.....(((.................)))......))))))........((.................)).....)))))))............... (-13.13 = -13.13 + -0.00)
Location | 7,201,765 – 7,201,862 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -21.34 |
Energy contribution | -21.23 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.23 |
Structure conservation index | 0.78 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850920 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7201765 97 - 22224390 --------------AGCAUCACUGGUUGAUGAAA-AGGCAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGC --------------.(((((((((.((.......-)).))))..............((((((.((((.((((..(((....)))...)))))))).)))))).....))))) ( -26.10) >DroSec_CAF1 9637 97 - 1 --------------AGCAUCACUGGUUGAUAAAA-AGGUAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGGUGGAGGCCAUUUGGUUGCCUGACAUGAUGC --------------.(((((((((.((.......-)).))))...(((((........)).........((((((.(((((((....))))))).)))))).)))..))))) ( -25.40) >DroYak_CAF1 11398 112 - 1 GUUAUCACCAUUCAGGCAUCACUGGUUGAUAAAGGCGGUGGCAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUGAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGC .(((((((((((...((.((((((.((.....)).))))))....(((.........)))..))..)))))))))))......((..(((....)))..))........... ( -30.30) >consensus ______________AGCAUCACUGGUUGAUAAAA_AGGUAGUAAGGUCGUGAAAAGAGGCAAGUAAGGUGGUAAUAAGAUGUUGGAGGCCAUUUGGUUGCCUGAAAUGAUGC ...............(((((((((.((........)).)))...............((((((.((((.((((..((......))...)))))))).))))))....)))))) (-21.34 = -21.23 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:55 2006