Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,140,474 – 7,140,571 |
Length | 97 |
Max. P | 0.948474 |
Location | 7,140,474 – 7,140,571 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.67 |
Mean single sequence MFE | -24.49 |
Consensus MFE | -17.88 |
Energy contribution | -17.72 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -2.39 |
Structure conservation index | 0.73 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7140474 97 + 22224390 ----------AAAAAAAAACCACCUC--UCCACCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUU-CAGCGCACAUG--CGUUAUCGGACCCAA---AUUGGAUUUA ----------................--((((..((.((((((....)))))).))...--...........(((-((((((....)--))))...))))....---..)))).... ( -23.90) >DroSec_CAF1 8243 109 + 1 CCCUUCCACCUAAAAACACCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUU-CAGCGCACAUG--CGUUAUCGGACCCAA---AUUGGAUUUA ....((((..........................((.((((((....)))))).))...--...........(((-((((((....)--))))...))))....---..)))).... ( -24.00) >DroSim_CAF1 2610 109 + 1 CCCUUCCACCUAAAAACACCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUU-CAGCGCACAUG--CGUUAUCGGACCCAA---AUUGGAUUUA ....((((..........................((.((((((....)))))).))...--...........(((-((((((....)--))))...))))....---..)))).... ( -24.00) >DroEre_CAF1 8413 105 + 1 ----AACACC---CAACACCCAACAUCAGCAGCCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUG-CGGCGUACAUG--CGUUAUCGGACCCCAAAUAUUGGAUUUA ----......---......((((.....(((...((.((((((....)))))).))..(--(((((.((....))-.))))))..))--)(((....)))........))))..... ( -27.10) >DroYak_CAF1 8002 117 + 1 CCCUGCCACCCACAAACAGCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUUAUAUGCCCCAUAUGUUCCAGCGUACAUGCGCGUUAUCGGACCCCAAAUAUUGGAUUUA .....(((...........((.............((.((((((....)))))).))..((((((...)))))).....((((....))))......))...........)))..... ( -23.45) >consensus CCCUUCCACCUAAAAACACCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUU__AUGCCCCAUAUGUU_CAGCGCACAUG__CGUUAUCGGACCCAA___AUUGGAUUUA ...................(((..........((((.((((((....)))))).)).....................((((........))))...))...........)))..... (-17.88 = -17.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:21 2006