Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,061,124 – 7,061,214 |
Length | 90 |
Max. P | 0.535251 |
Location | 7,061,124 – 7,061,214 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 85.10 |
Mean single sequence MFE | -31.84 |
Consensus MFE | -19.87 |
Energy contribution | -20.67 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.62 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7061124 90 - 22224390 GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAGUUGCCAGUUGCCAGUUGCCAGUUGUGCCAG-------UUGCUGGCGGCAA .........(((.(((..(((((((((.((.........)).))))).)))).))).)))(((((((((........-------..))))))))).. ( -36.80) >DroSec_CAF1 52157 83 - 1 GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAGUUGC-------CAGUUGCCAGUUGUGCCAG-------UUGCUGGCGGCAA ........(((....)))(((((((((.((.........)).))))).)))-------).(((((((((........-------..))))))))).. ( -32.30) >DroSim_CAF1 52593 76 - 1 GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAG--------------UUGCCAGUUGUGCCAG-------UUGCUGGCGGCAA ..((((..(((....)))(((((((((.((.........)).)))))--------------.)))))))).((((((-------...)))))).... ( -26.40) >DroEre_CAF1 53029 78 - 1 GAAACUU-UUGGGGACGAGUCGCUGGUUGCGAGUUGCAAGUUGCAAGUUGC-------CAGUUGCCAGUUGCUGCAG-----------UGGCGGCAA ......(-(((....))))..((((((.((((.((((.....)))).))))-------.....))))))((((((..-----------..)))))). ( -29.60) >DroYak_CAF1 52152 90 - 1 CAAACUUUUUGGGGACGAGUCGCUGGUUGCGAGUUGCAAGUUGCAAGUUGC-------CAGUUGCCAGUUGUGCCAGUUGCCAGUUGCUGGCGGCAA ...........((.(((....((((((.((((.((((.....)))).))))-------.....))))))))).)).((((((((...)))))))).. ( -34.10) >consensus GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAGUUGC_______CAGUUGCCAGUUGUGCCAG_______UUGCUGGCGGCAA .......((((....))))..((.(.((((.....)))).).))................(((((((((.................))))))))).. (-19.87 = -20.67 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:56 2006