Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,036,164 – 7,036,265 |
Length | 101 |
Max. P | 0.987738 |
Location | 7,036,164 – 7,036,265 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 86.69 |
Mean single sequence MFE | -39.74 |
Consensus MFE | -33.06 |
Energy contribution | -32.58 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -2.40 |
Structure conservation index | 0.83 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7036164 101 + 22224390 CCACA------UUUCCAUUGGGCCGAA-AACAAGGUCCGCCGGGGCAACCACCGCAGGCAAAGGAGGACAGUCGGUGGUUUUGCGGCCCAA-AAGGACG----AAAGAACAUG .....------..(((.((((((((..-..(((((.((((((((....)).((.(........).)).....)))))))))))))))))))-..)))(.----...)...... ( -36.60) >DroSec_CAF1 27728 100 + 1 CCACA------UUUCCAUUGGGCCGAA-AACAAGGUCCGCCGGGGCAACCACCGCAGGCAA-UGAGGACAGUCGGUGGUUUUGCGGCCCAA-AAGGACG----AAAGGACGUG .(((.------......((((((((..-..(((((.((((((((....)).((.((.....-)).)).....)))))))))))))))))))-..(..(.----...)..)))) ( -41.20) >DroSim_CAF1 27801 100 + 1 CCACA------UUUCCAUUGGGCCGAA-AACAAGGUCCGCCGGGGCAACCACCGCAGGCAA-UGAGGACAGUCGGUGGUUUUGCGGCCCAA-AAGGACG----AAAGGACGUG .(((.------......((((((((..-..(((((.((((((((....)).((.((.....-)).)).....)))))))))))))))))))-..(..(.----...)..)))) ( -41.20) >DroEre_CAF1 27294 105 + 1 CCACU------GUUUUGUUGGGCCGAC-AACGAGGUCCGCCGGGGCAACCACCGCAGCCAA-UGAGGACAGUCGGUGGCUUUGCGGCCCAAAAAGGACGCGAAAAAGGACGAA .....------(((((.((((((((..-..(((((.((((((((....)).((.((.....-)).)).....)))))))))))))))))))..)))))............... ( -39.80) >DroYak_CAF1 25512 107 + 1 CCACUUCCAUUUCAUCAUUGGGCCGACCAACAAGGUCCGCUGGGGCAAACACCGCAGCCAA-UGAGGACAGUCGGUGGUUUUGCGGCCCAA-AAGGACG----AAAGGAUAUA .....(((.((((.((.((((((((((((.....((((((((.((......)).))))...-...))))......))))....))))))))-...)).)----)))))).... ( -39.90) >consensus CCACA______UUUCCAUUGGGCCGAA_AACAAGGUCCGCCGGGGCAACCACCGCAGGCAA_UGAGGACAGUCGGUGGUUUUGCGGCCCAA_AAGGACG____AAAGGACGUG .............(((.((((((((.....(((((.((((((((....)).((.(........).)).....)))))))))))))))))))...)))................ (-33.06 = -32.58 + -0.48)
Location | 7,036,164 – 7,036,265 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.69 |
Mean single sequence MFE | -38.17 |
Consensus MFE | -27.50 |
Energy contribution | -28.34 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7036164 101 - 22224390 CAUGUUCUUU----CGUCCUU-UUGGGCCGCAAAACCACCGACUGUCCUCCUUUGCCUGCGGUGGUUGCCCCGGCGGACCUUGUU-UUCGGCCCAAUGGAAA------UGUGG ((((((....----..(((..-((((((((...((((((((...((........))...))))))))((....))..........-..)))))))).)))))------)))). ( -35.00) >DroSec_CAF1 27728 100 - 1 CACGUCCUUU----CGUCCUU-UUGGGCCGCAAAACCACCGACUGUCCUCA-UUGCCUGCGGUGGUUGCCCCGGCGGACCUUGUU-UUCGGCCCAAUGGAAA------UGUGG (((((.....----..(((..-((((((((...((((((((...((.....-..))...))))))))((....))..........-..)))))))).))).)------)))). ( -36.10) >DroSim_CAF1 27801 100 - 1 CACGUCCUUU----CGUCCUU-UUGGGCCGCAAAACCACCGACUGUCCUCA-UUGCCUGCGGUGGUUGCCCCGGCGGACCUUGUU-UUCGGCCCAAUGGAAA------UGUGG (((((.....----..(((..-((((((((...((((((((...((.....-..))...))))))))((....))..........-..)))))))).))).)------)))). ( -36.10) >DroEre_CAF1 27294 105 - 1 UUCGUCCUUUUUCGCGUCCUUUUUGGGCCGCAAAGCCACCGACUGUCCUCA-UUGGCUGCGGUGGUUGCCCCGGCGGACCUCGUU-GUCGGCCCAACAAAAC------AGUGG ............(((.......(((((((((((((((((((...(((....-..)))..))))))))((....))........))-).))))))))......------.))). ( -38.24) >DroYak_CAF1 25512 107 - 1 UAUAUCCUUU----CGUCCUU-UUGGGCCGCAAAACCACCGACUGUCCUCA-UUGGCUGCGGUGUUUGCCCCAGCGGACCUUGUUGGUCGGCCCAAUGAUGAAAUGGAAGUGG (((.((((((----((((...-((((((((((((..(((((...(((....-..)))..)))))))))).......((((.....))))))))))).))))))).))).))). ( -45.40) >consensus CACGUCCUUU____CGUCCUU_UUGGGCCGCAAAACCACCGACUGUCCUCA_UUGCCUGCGGUGGUUGCCCCGGCGGACCUUGUU_UUCGGCCCAAUGGAAA______UGUGG ................(((...((((((((...((((((((.(...............)))))))))((....)).............)))))))).)))............. (-27.50 = -28.34 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:45 2006