Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,028,809 – 7,028,903 |
Length | 94 |
Max. P | 0.970953 |
Location | 7,028,809 – 7,028,903 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 73.20 |
Mean single sequence MFE | -14.91 |
Consensus MFE | -11.92 |
Energy contribution | -11.78 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.80 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7028809 94 - 22224390 AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC-----GUCUCCCAGAAAAACCCCACCACCACC--CCCCUCCCCCCUU---C-- .......(((((((((.....))))))))).(((.(.((((((........))-----)))).)..)))................--.............---.-- ( -16.00) >DroVir_CAF1 99385 89 - 1 AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUUCGCAAACGCUGUGCGGCCCGACGCGUUACCCAAC----------CCGC-CCCCCCCAA---CCCCG---CCA .......(((((((((.....))))))))).....((....)).(.((((......(((.........----------.)))-.........---..)))---)). ( -15.43) >DroSec_CAF1 20345 76 - 1 AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC-----GUCUCCCAGA---------------CC--CCCAU---UUUUU---U-- .......(((((((((.....))))))))).....(.((((((........))-----)))).)....---------------..--.....---.....---.-- ( -15.40) >DroSim_CAF1 19526 76 - 1 AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC-----GUCUCCCAGA---------------CC--CCCAU---UUCUU---U-- .......(((((((((.....))))))))).....(.((((((........))-----)))).)....---------------..--.....---.....---.-- ( -15.40) >DroEre_CAF1 20513 79 - 1 AUACAUGUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGAUAUGUGCCAC-----GUCUCCCAGA---------------CC--CCCUA---CUUUUUUUU-- .(((((((((((((((.....)))))))).....((....)))))))))....-----(((.....))---------------).--.....---.........-- ( -14.80) >DroAna_CAF1 64894 76 - 1 AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACUCCAUGUGCCGG-----CUUCACCUUC---------------UC--CUCAU---CCUUU---C-- .......(((((((((.....)))))))))...(((((.(.....).)).)))-----..........---------------..--.....---.....---.-- ( -12.40) >consensus AUACAUAUGUCGGAUGUAAAUCAUUUGACAAUUCCGCAGACGUUAUGUGCCAC_____GUCUCCCAGA_______________CC__CCCAU___CCCUU___C__ .......(((((((((.....)))))))))....((((.......))))......................................................... (-11.92 = -11.78 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:40 2006