Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,006,966 – 7,007,101 |
Length | 135 |
Max. P | 0.984459 |
Location | 7,006,966 – 7,007,082 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.31 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -36.85 |
Energy contribution | -36.85 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.89 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7006966 116 - 22224390 GUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCC-CUG--CUGAAAUCGCCAGGAUAACC-CUGGAUACCUUACUUUCUU ((((.(((((...(((((((.....)))))))(((((.(((((.(......).))))))))))....))))).)-).)--)........(((((.....)-))))............... ( -41.20) >DroSec_CAF1 8199 116 - 1 GUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCC-CUG--CUGAAAUCGCCAGGAUAACC-CUGGAUACCUUACUUUCUU ((((.(((((...(((((((.....)))))))(((((.(((((.(......).))))))))))....))))).)-).)--)........(((((.....)-))))............... ( -41.20) >DroEre_CAF1 14062 116 - 1 GUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCC-CUG--CUGAAAUCGCCAGGAUAACC-CUGGAUACCUUACUUUCUU ((((.(((((...(((((((.....)))))))(((((.(((((.(......).))))))))))....))))).)-).)--)........(((((.....)-))))............... ( -41.20) >DroYak_CAF1 22505 120 - 1 GUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCCUCUGCUCUGAAAUCGCCAGGAUAACCCCUGGAUACCUUACUUUCUU (.((.(((((...(((((((.....)))))))(((((.(((((.(......).))))))))))....))))))).).............(((((......)))))............... ( -41.60) >consensus GUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCC_CUG__CUGAAAUCGCCAGGAUAACC_CUGGAUACCUUACUUUCUU ..((((((((...(((((((.....)))))))(((((.(((((.(......).))))))))))....))))).................((((........))))..))).......... (-36.85 = -36.85 + 0.00)
Location | 7,007,005 – 7,007,101 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -36.03 |
Consensus MFE | -36.03 |
Energy contribution | -36.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.70 |
Structure conservation index | 1.00 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7007005 96 + 22224390 CAGGGGGCGGAAAGGGUGGUUUGCGAAAUGAAUAACAAACCCACCACUGGCCCGUGUGACCAGUCGACCGCCACCACCCAAAAGGGACACCCAACC ..((((((((....(((((((((............)))).)))))((((((......).)))))...)))))....(((....)))...))).... ( -34.80) >DroSec_CAF1 8238 96 + 1 CAGGGGGCGGAAAGGGUGGUUUGCGAAAUGAAUAACAAACCCACCACUGGCCCGUGUGACCAGUCGACCGCCACCACCCGAAAGGGACACCCACCC ..((((((((....(((((((((............)))).)))))((((((......).)))))...)))))....(((....)))...))).... ( -38.50) >DroEre_CAF1 14101 96 + 1 CAGGGGGCGGAAAGGGUGGUUUGCGAAAUGAAUAACAAACCCACCACUGGCCCGUGUGACCAGUCGACCGCCACCACCCAAAAGGGACACCCACCC ..((((((((....(((((((((............)))).)))))((((((......).)))))...)))))....(((....)))...))).... ( -34.80) >consensus CAGGGGGCGGAAAGGGUGGUUUGCGAAAUGAAUAACAAACCCACCACUGGCCCGUGUGACCAGUCGACCGCCACCACCCAAAAGGGACACCCACCC ..((((((((....(((((((((............)))).)))))((((((......).)))))...)))))....(((....)))...))).... (-36.03 = -36.03 + 0.00)
Location | 7,007,005 – 7,007,101 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -39.67 |
Consensus MFE | -38.23 |
Energy contribution | -38.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.96 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7007005 96 - 22224390 GGUUGGGUGUCCCUUUUGGGUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCCCUG ....(((...(((....)))....(((((...(((((((.....)))))))(((((.(((((.(......).))))))))))....)))))))).. ( -37.70) >DroSec_CAF1 8238 96 - 1 GGGUGGGUGUCCCUUUCGGGUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCCCUG (((.(((((........(((((((.((((...(((((((.....)))))))(((((((.....)))))))))))..)))))))....)))))))). ( -40.30) >DroEre_CAF1 14101 96 - 1 GGGUGGGUGUCCCUUUUGGGUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCCCUG (((.(((((........(((((((.((((...(((((((.....)))))))(((((((.....)))))))))))..)))))))....)))))))). ( -41.00) >consensus GGGUGGGUGUCCCUUUUGGGUGGUGGCGGUCGACUGGUCACACGGGCCAGUGGUGGGUUUGUUAUUCAUUUCGCAAACCACCCUUUCCGCCCCCUG (((.(((((........(((((((.((((...(((((((.....)))))))(((((((.....)))))))))))..)))))))....)))))))). (-38.23 = -38.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:32 2006