Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,004,824 – 7,004,941 |
Length | 117 |
Max. P | 0.998515 |
Location | 7,004,824 – 7,004,941 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.15 |
Mean single sequence MFE | -41.93 |
Consensus MFE | -26.25 |
Energy contribution | -29.37 |
Covariance contribution | 3.11 |
Combinations/Pair | 1.03 |
Mean z-score | -4.63 |
Structure conservation index | 0.63 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7004824 117 - 22224390 GGAAUUUUCCUCGCUGGCAUGUGAGUGUGUGUGUGUGUGUGUUAGUAUAAGCGACGCCAUUGUGUAUCGUACAUGCGCACACACACA--UACAUAUGUG-GAAUCAACCACCCACACAUC (((....)))........(((((.((((((((((((((((((..((((..((((..(......)..))))..)))))))))))))))--)))))))(((-(......))))...))))). ( -45.40) >DroSec_CAF1 6135 111 - 1 GGAAUUUUCCUCGCUGCCAUGUG--UGUGU--CUGUGUGUGUUGGUAUAAGCGUCGCCAUUGUGUAUUGUACAUGCGCACACACAC----ACAUAUGUG-AAAUCAACCNNNNNNNNNNN (((....))).......((((((--(((((--.(((((((((..((((((....(((....)))..))))))..))))))))).))----)))))))))-.................... ( -36.00) >DroEre_CAF1 11921 110 - 1 GGAAUUUUCCUCGCUACCAUGUG--UGUGUGUGUGU--------GUAUAAGAGACGCCAUUGUGUAUUGUACAUGCGCACACACACACACACACAUGUGCGAAUCAACCACCCACACAUC (((....)))((((...((((((--(((((((((((--------((....(......)...((((((.....))))))))))))))))))))))))).)))).................. ( -44.40) >consensus GGAAUUUUCCUCGCUGCCAUGUG__UGUGUGUGUGUGUGUGUU_GUAUAAGCGACGCCAUUGUGUAUUGUACAUGCGCACACACACA___ACAUAUGUG_GAAUCAACCACCCACACAUC (((....))).......((((((..(((((((((((((((....((((((...((((....)))).)))))))))))))))))))))....))))))....................... (-26.25 = -29.37 + 3.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:22 2006