Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,004,264 – 7,004,381 |
Length | 117 |
Max. P | 0.907939 |
Location | 7,004,264 – 7,004,381 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -44.48 |
Consensus MFE | -30.40 |
Energy contribution | -32.72 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.06 |
Mean z-score | -2.32 |
Structure conservation index | 0.68 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7004264 117 - 22224390 C---AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCUGCUGCGGCCUGUCUCUACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGGAAACUCGACGCUGCUCCCUGGC .---.....(((..((.(((.(((((.((((((..((((....).))).)))))).))))).))).....(((((((....((((....))))..((....)))))))))))..)))... ( -48.70) >DroSec_CAF1 5604 113 - 1 C---AAGAAAGGAUCCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCU---GCGGCCUGUCUCAACGAUGGCGUCGCAUCGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCCGU-GC .---.......((..((((.(((((((((..(((....)))..))))))---))).))))..)).(((....))).(((.(((.(((..((((..((....)).)))).))).))))-)) ( -45.90) >DroSim_CAF1 8622 113 - 1 C---AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCU---GCGGCCUGUCUCAACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCCAC-GC .---......(((.(((((((((((((((..(((....)))..))))))---((((((((((.....))))).)))))......))))).(((..((....)).))).)))))))..-.. ( -48.10) >DroEre_CAF1 11376 116 - 1 CAAGGAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGAAACAUCCU---GCGGCCUGUCUCCACGAUGGCGUCGCAAUGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCGGU-GC ..........(((.(((((.(((((((((...((.....))..))))))---))).))))).))).(((((((((((...(((((....))))).((....)))))))))).)))..-.. ( -50.70) >DroYak_CAF1 19814 92 - 1 C---GAAAAAGGAUGCAGCAUGCAACA----UCCUGGAGGCAACAUCCU---GCGGCCUGUCACUACGAUGGCGUCGCCACGGCGCAUUUGCCAAAGGAAAC------------------ .---.....((((((..(....)..))----))))...(....).((((---((((((((((.....))))).)))))...((((....))))..))))...------------------ ( -29.00) >consensus C___AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCU___GCGGCCUGUCUCAACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGGAAACUCGGCGCUGCUCCGU_GC ..........(((.((((...((((.((((.(((.((((....).)))....((((((((((.....))))).)))))...)))))))))))...((....)).....)))))))..... (-30.40 = -32.72 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006