Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,998,385 – 6,998,499 |
Length | 114 |
Max. P | 0.522468 |
Location | 6,998,385 – 6,998,499 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.43 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -29.42 |
Energy contribution | -29.87 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.71 |
Structure conservation index | 0.82 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6998385 114 + 22224390 CCC---CCCCGC-UUUACACAGUAGUCUGCGUCUGCCAUUGCUGUCACUCCG-GCGAUAGACGAGUUCGGGCCAGAAUCUCGGCCCACACACACAAACGUGGAGUCCACAACCACUCA-A ...---....((-.((((...))))...))((((...(((((((......))-)))))))))((((..(((((........)))))............((((...))))....)))).-. ( -31.70) >DroSec_CAF1 20741 118 + 1 CCCCUUCCCCGCAUAUACACAGUAGUGUGCGUCUGCCAUUGCUGUCACUCCGGGCGAUAGACGACUUCGGGCCAGAAUCUCGGCCCACA--CACAAGCGUGGGGUCCACAACCACUCAAA ((((.((((((.......(((((((((.((....))))))))))).....)))).))...(((.(((.(((((........)))))...--...))))))))))................ ( -37.90) >DroSim_CAF1 6313 118 + 1 NNNNNNNNNNGCAUAUGCACAGUAGUGUGCGUCUGCCAUUGCUGUCACUCCG-GCGAUAGACGACUUCGGGCCAGAAUCUCGGCCCACACACACAAGCGUGGGGUCCACAACCACUCA-A ..........((....))...((.((((((((((...(((((((......))-)))))))))).....(((((........))))).)))))))..(.((((.........)))).).-. ( -37.80) >consensus CCC___CCCCGCAUAUACACAGUAGUGUGCGUCUGCCAUUGCUGUCACUCCG_GCGAUAGACGACUUCGGGCCAGAAUCUCGGCCCACACACACAAGCGUGGGGUCCACAACCACUCA_A ..................(((((((((.((....))))))))))).((((((.((((.........))(((((........)))))..........)).))))))............... (-29.42 = -29.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:14 2006