Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,938,225 – 6,938,338 |
Length | 113 |
Max. P | 0.627129 |
Location | 6,938,225 – 6,938,338 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -46.82 |
Consensus MFE | -42.75 |
Energy contribution | -42.62 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.05 |
Mean z-score | -1.37 |
Structure conservation index | 0.91 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6938225 113 + 22224390 UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUUUCGCGGAUCCCCGA-------UUCCCGGAUCGCGGAUC ..((((.(((((((((((((((.(((.........)))..)))(((((((...))))))).)))))))))))).)).))........(((((.(((-------((....))))).))))) ( -46.70) >DroSec_CAF1 23277 113 + 1 UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGA-------UUCCCGGGUCGCGGAUC ..((((.(((((((((((((((.(((.........)))..)))(((((((...))))))).)))))))))))).)).))(((.(((((...((((.-------....)))))))))))). ( -48.50) >DroEre_CAF1 31853 100 + 1 UCGCGUGGGCUACCUAAGAUC-------------CCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGA-------UACCCGGAUCGCGGAUC ..((((.((((((((((((..-------------.((((.((.......)).)))).....)))))))))))).)).))(((.((((.((((....-------.....))))))))))). ( -44.50) >DroYak_CAF1 24450 120 + 1 UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGAUUCCCGAUUCCCGGAUCGCGGAUC ..((((.(((((((((((((((.(((.........)))..)))(((((((...))))))).)))))))))))).)).))........(((((.((((..(((.....))))))).))))) ( -47.60) >consensus UCGCGUGGGCUACCUAAGAUCCCGCGAAUUGAUCCCGCUAGGAAGUGUGCCAGGCGUACUUUCUUGGGUGGCCGGCUGCAUCUCGCGGAUCCCCGA_______UUCCCGGAUCGCGGAUC ..((((.((((((((((((...............((....))((((((((...)))))))))))))))))))).)).))(((.((((.((((..((........))..))))))))))). (-42.75 = -42.62 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:32 2006