Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,926,474 – 6,926,606 |
Length | 132 |
Max. P | 0.685698 |
Location | 6,926,474 – 6,926,570 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 73.07 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -14.26 |
Energy contribution | -14.42 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.27 |
Mean z-score | -1.58 |
Structure conservation index | 0.55 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6926474 96 + 22224390 UUUUUAACAUUUCUUUUGUCAACAACAAUCAAUAAAAAUGAGAUGAGUCGGUCGUUUUUCCUUCUACUGAAGGA---AGGAAAAGCGAUCAGUUCUGGG .......((((((((((.................)))).))))))....((((((((((((((((......)))---)))))))))))))......... ( -28.23) >DroPse_CAF1 10792 92 + 1 UUU------UUUUUUCUGUCAACAACAAUCAAUGAAAAUGAGUUGAAUGGACCACCGUUCCCCAGGCCUGGGGCUCGGGGAAGGACGAUCGGU-UCGGG ...------........(((.....((((..((....))..))))....)))..((.((((((..(((...)))..))))))((((.....))-)))). ( -26.30) >DroSec_CAF1 11496 94 + 1 UUUUUAACAUU-AUUUUGUCAACAACAAUCAAUAAAAAUGAGAUGAGUCGAUCGUUUUUCCUGCGGCUGA-GGA---AGGAAAAGCGAUCAGUUCUGGG .(((((...((-(((((((.....))))..)))))...))))).(((..(((((((((((((.(......-)..---)))))))))))))..))).... ( -22.60) >DroEre_CAF1 19942 95 + 1 UUUUAAACAUUUCUUUUGUCAACAACAAUCAAUGAAAAUGAGUUAAGUCGGUCGUUUUUCCUUCGGCUGA-GGA---AGGAAAAGCGAUCGGUUCGGGG .......((((((..((((.....)))).....).)))))..(..(..((((((((((((((((......-.))---))))))))))))))..)..).. ( -27.80) >DroPer_CAF1 10799 92 + 1 UUU------UUUUUCCUGUCAACAACAAUCAAUGAAAAUGAGUUAAAUGGACCACCGUUCCCGUGGCCAGGGGCUCGGGGAAGGACGAUCGUU-CGGGU ..(------((((((((..............((....))(((((...(((.((((.......)))))))..))))))))))))))(((....)-))... ( -23.90) >consensus UUUU_AACAUUUCUUUUGUCAACAACAAUCAAUGAAAAUGAGUUGAGUCGAUCGUUUUUCCUGCGGCUGA_GGA___AGGAAAAGCGAUCGGUUCGGGG .................................................(((((((((((((....((...))....)))))))))))))......... (-14.26 = -14.42 + 0.16)
Location | 6,926,497 – 6,926,606 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -18.85 |
Consensus MFE | -11.99 |
Energy contribution | -11.49 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.21 |
Mean z-score | -1.51 |
Structure conservation index | 0.64 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6926497 109 - 22224390 AUACUCUAUUGUACUUUUA----UCUACUCACAGCACUAACCCAGAACUGAUCGCUUUUCCU---UCCUUCAGUAGAAGGAAAAACGACCGACUCAUCUCAUUUUUAUUGAUUGUU .(((......)))......----.......((((((.(((....((..((((((.(((((((---((........))))))))).))).....)))..))....))).)).)))). ( -16.00) >DroPse_CAF1 10809 115 - 1 AUACUCUACUCCACUUUAAUCGAUCUACUCACAGCACUAACCCGA-ACCGAUCGUCCUUCCCCGAGCCCCAGGCCUGGGGAACGGUGGUCCAUUCAACUCAUUUUCAUUGAUUGUU ................((((((((((......)).........((-(..(((((.(((((((((.(((...))).))))))).)))))))..)))...........)))))))).. ( -27.10) >DroSec_CAF1 11518 108 - 1 AUACUCUAUUGUACUUUUA----UCUACUCACAGCACUAACCCAGAACUGAUCGCUUUUCCU---UCC-UCAGCCGCAGGAAAAACGAUCGACUCAUCUCAUUUUUAUUGAUUGUU .(((......)))......----.........((((........((..((((((.(((((((---.(.-......).))))))).))))))..))...(((.......))).)))) ( -15.70) >DroEre_CAF1 19965 108 - 1 AUACUCUAUUGUACUUUUA----UCUACUCACCGCACUAACCCCGAACCGAUCGCUUUUCCU---UCC-UCAGCCGAAGGAAAAACGACCGACUUAACUCAUUUUCAUUGAUUGUU .(((......)))......----.........................((.(((.(((((((---((.-......))))))))).))).))......................... ( -15.60) >DroYak_CAF1 12159 109 - 1 AUACUCUAUUGUAAUUUUA----UCUACUCACAGCACUAACCCAGUACCGAUCGCUUUUCCUU--UUC-UCAGACGAAGGAAAAUCGAUCGACUCAUCUCAUUUUCAUUGAUUGUU .(((......)))......----.........((((............((((((.((((((((--(..-......))))))))).)))))).......(((.......))).)))) ( -19.40) >DroPer_CAF1 10816 115 - 1 AUACUCUACUCCACUUUAAUCGAUCUACUCACAGCACUAAACCCG-AACGAUCGUCCUUCCCCGAGCCCCUGGCCACGGGAACGGUGGUCCAUUUAACUCAUUUUCAUUGAUUGUU ................((((((((((......))...........-...(((((.(((((((...(((...)))...))))).)))))))................)))))))).. ( -19.30) >consensus AUACUCUAUUGUACUUUUA____UCUACUCACAGCACUAACCCAGAACCGAUCGCUUUUCCU___UCC_UCAGCCGAAGGAAAAACGAUCGACUCAACUCAUUUUCAUUGAUUGUU ................................((((.............(((((.(((((((...............))))))).)))))........(((.......))).)))) (-11.99 = -11.49 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:20 2006