Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,893,605 – 6,893,700 |
Length | 95 |
Max. P | 0.767114 |
Location | 6,893,605 – 6,893,700 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 62.07 |
Mean single sequence MFE | -22.64 |
Consensus MFE | -8.91 |
Energy contribution | -9.47 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -2.18 |
Structure conservation index | 0.39 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6893605 95 + 22224390 UGCACAGCAAGAAAAUAUUAGGUGAUAU-CCUUGUUCAGCA------------UUUACAUUUCUUCUAUUUUUA----UAUAUUUCUAUUCUCACAGUGUAGCUGUGCAUUA ((((((((..(((((((..(((......-...((.....))------------........)))..))))))).----((((((...........))))))))))))))... ( -18.63) >DroSec_CAF1 17909 95 + 1 UGCACAGCAAGAAAAUAUUAGGAGGUAC-CCUUGUUCUAUA------------UAUAUAUAUAUGUCCUUGUUA----UAUAUAUUUUUUCUUACAGUGUAGCUGUGCAUUA (((((((((((((((((((((((.(...-...).))))).)------------)))(((((((((.......))----)))))))..))))))........))))))))... ( -23.10) >DroYak_CAF1 20527 104 + 1 UGCACUCCAAGAAUAUAUUAAGUGCAAUCCCUUGUUCGGCCCCGUAACAAUAUCAA--------UCAAUUGAUAUCAGCAGUGUGGUUUUCUUGCAGUGUAGCUGUGCAUUG ((((((.((((((.((....(.(((.......((((((....)).))))(((((((--------....)))))))..))).)...)).)))))).))))))........... ( -26.20) >consensus UGCACAGCAAGAAAAUAUUAGGUGAUAU_CCUUGUUCAGCA____________UAUA_AU_U_UUCAAUUGUUA____UAUAUUUCUUUUCUUACAGUGUAGCUGUGCAUUA ((((((((..........((((........))))..........................................................(((...)))))))))))... ( -8.91 = -9.47 + 0.56)
Location | 6,893,605 – 6,893,700 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 62.07 |
Mean single sequence MFE | -21.63 |
Consensus MFE | -8.42 |
Energy contribution | -8.87 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.08 |
Mean z-score | -2.35 |
Structure conservation index | 0.39 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6893605 95 - 22224390 UAAUGCACAGCUACACUGUGAGAAUAGAAAUAUA----UAAAAAUAGAAGAAAUGUAAA------------UGCUGAACAAGG-AUAUCACCUAAUAUUUUCUUGCUGUGCA ...((((((((....((((....(((....))).----.....))))(((((((((...------------......)))(((-......))).....)))))))))))))) ( -20.10) >DroSec_CAF1 17909 95 - 1 UAAUGCACAGCUACACUGUAAGAAAAAAUAUAUA----UAACAAGGACAUAUAUAUAUA------------UAUAGAACAAGG-GUACCUCCUAAUAUUUUCUUGCUGUGCA ...((((((((........(((((((.(((((((----((.........))))))))).------------.........(((-(....))))....))))))))))))))) ( -22.20) >DroYak_CAF1 20527 104 - 1 CAAUGCACAGCUACACUGCAAGAAAACCACACUGCUGAUAUCAAUUGA--------UUGAUAUUGUUACGGGGCCGAACAAGGGAUUGCACUUAAUAUAUUCUUGGAGUGCA .............((((.((((((..((.....((.((((((((....--------))))))))))....)).((......))................)))))).)))).. ( -22.60) >consensus UAAUGCACAGCUACACUGUAAGAAAAAAAAUAUA____UAACAAUAGAA_A_AU_UAUA____________UGCAGAACAAGG_AUACCACCUAAUAUUUUCUUGCUGUGCA ...((((((((....(.....)..........................................................(((.......)))...........)))))))) ( -8.42 = -8.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:02 2006