Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,859,716 – 6,859,836 |
Length | 120 |
Max. P | 0.509389 |
Location | 6,859,716 – 6,859,836 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -43.04 |
Consensus MFE | -38.64 |
Energy contribution | -38.48 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -1.14 |
Structure conservation index | 0.90 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6859716 120 - 22224390 GAAGUCAUCCGACUCGUUGCCGGCAUCGUAGUUGGUGCGCAUGUUCUCCGAUUUCUGGAGGGACGCAUAGCUGCGCAGCUCCGCCUCCAGCUCACGCUGCUUGGCAGCCUCCUUCUCCUG ((.(((....)))))((((((((((.(((((((((.((((...(((((((.....)))))))..))..((((....))))..))..)))))).))).))).)))))))............ ( -44.90) >DroSec_CAF1 2880 120 - 1 GAAGUCAUCCGACUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUUCGCAGCUCCGCCUCCAGCUCCCGUUGCUUGGCAGCCUCCUUCUCCUG ((((((....(((....(((..((((((....))))))))).)))....)))))).(((((((.((..((((....))))..(((..((((....))))...))).)).))))))).... ( -39.40) >DroSim_CAF1 2880 120 - 1 GAAGUCAUCCGACUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUUCGCAGCUCCGCCUCCAGCUCCCGUUGCUUGGCAGCCUCCUUCUCCUG ((((((....(((....(((..((((((....))))))))).)))....)))))).(((((((.((..((((....))))..(((..((((....))))...))).)).))))))).... ( -39.40) >DroEre_CAF1 2959 120 - 1 GAAGUCAUCCGAUUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGUCUUCUGGAGGGACGCAUAGCUGCGAAGCUCCGCCUCCAGCUCCCGCUGCUUGGCGGCCUCCUUCUCCUU ((((..................((.(((((((((.((((....(((((((.....))))))).))))))))))))).)).(((((..((((....))))...)))))....))))..... ( -44.40) >DroYak_CAF1 2967 120 - 1 GAAGUCAUCCGACUCGUUACCGGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUGCGUAGCUCCGCCUCCAGCUCCCGCUGCUUGGCGGCCUCCUUCUCCUG ((((((....(((.(((.((((((......)))))))))...)))....)))))).(((((.(((((....)))))....(((((..((((....))))...))))))))))........ ( -47.10) >consensus GAAGUCAUCCGACUCGUUGCCCGCAUCGUAGUUGGUGCGCAUGUUCUCCGACUUCUGGAGGGACGCAUAGCUGCGCAGCUCCGCCUCCAGCUCCCGCUGCUUGGCAGCCUCCUUCUCCUG ((((((....(((....(((..((((((....))))))))).)))....)))))).(((((((.((..((((....))))..(((..((((....))))...))).)).))))))).... (-38.64 = -38.48 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:31 2006