Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,848,354 – 6,848,465 |
Length | 111 |
Max. P | 0.798027 |
Location | 6,848,354 – 6,848,465 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -18.02 |
Energy contribution | -21.14 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.17 |
Mean z-score | -2.36 |
Structure conservation index | 0.59 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6848354 111 - 22224390 AAAUGGAUUGGCAAUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUAAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGAAACCGUUGAACCAAUCCAAUCCAAAA-AAAACCAA ...((((((((((((((...((((((..((((((((...((((..............))))..))))))))..))))))))))))..))))))))........-........ ( -28.44) >DroSec_CAF1 28313 108 - 1 AAAUGGAUUGGCCAUGGGAUUUUCGGUCCAGUUGGGAAAUUCUUGAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCAAUCCAAA----AACCAA ...((((((((...(((..((..(((((((((..((.....))..)))....(((((.....))))).........))))))..)).)))..))))))))..----...... ( -33.60) >DroSim_CAF1 28360 108 - 1 AAAUGGAUUGGCCCUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUGAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCAAUCCAAA----AACCAA ...((((((((...(((..((..(((((((((((((.....)))))))....(((((.....))))).........))))))..)).)))..))))))))..----...... ( -35.00) >DroEre_CAF1 28803 112 - 1 AAAUGGAUUGGCUGUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUGGUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCUAUCCAAUCCGAUACCAA ...((((((((..((((((((..(((((((..((((.....))))..)....(((((.....))))).........)))))).......))))))))))))))))....... ( -34.40) >DroYak_CAF1 29523 90 - 1 GAAUGGAUUGGCUGUGGGAUUUUCGGUCCAGUCGUUAAAUUCUUGGUUUUGGCAAAUGGGAAAUCUGAUUGUCUUGG----------------------AAUCCGGAACCAA ((((.(((((((((.........))).)))))).....)))).(((((((((....(((((.(......).))))).----------------------...))))))))). ( -22.30) >consensus AAAUGGAUUGGCCAUGGGAUUUUCGGUCCAGUCGGGAAAUUCUUGAUUUUGGCAAAUGGAAAAUUUGAUUGUCUUGGGACCGUUGAACCAAUCCAAUCCAAA____AACCAA ...((((((((...(((......((((((...(((((...((..((((((.........)))))).))...))))))))))).....)))..))))))))............ (-18.02 = -21.14 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:29 2006