Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,735,071 – 6,735,164 |
Length | 93 |
Max. P | 0.983767 |
Location | 6,735,071 – 6,735,164 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.13 |
Mean single sequence MFE | -20.86 |
Consensus MFE | -20.01 |
Energy contribution | -20.34 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.96 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6735071 93 + 22224390 AAGACCACUGCUUGCAGCACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA .........(((((........(((((..((.(((...((((((..(((.....)))..))))))))).))..)))))......))))).... ( -21.34) >DroSec_CAF1 21285 93 + 1 AAGACCACUGCUUGCAACACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA .........(((((........(((((..((.(((...((((((..(((.....)))..))))))))).))..)))))......))))).... ( -21.34) >DroEre_CAF1 25821 93 + 1 AAAGCCACUGCCUGCAACACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA ..(((((.((.((((.((((...))))..))))...)).)))))..(((.....))).(((((.......................))))).. ( -19.90) >consensus AAGACCACUGCUUGCAACACUUUGUGUCAGCAGUUUCAAUGGCUAAUGCAACAUGCAAAAGCUGUAGCCGCCCACACACAACCACAAGCUUAA .........(((((........(((((..((.(((...((((((..(((.....)))..))))))))).))..)))))......))))).... (-20.01 = -20.34 + 0.33)
Location | 6,735,071 – 6,735,164 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 97.13 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -32.97 |
Energy contribution | -32.53 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -3.50 |
Structure conservation index | 0.94 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6735071 93 - 22224390 UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGCUGCAAGCAGUGGUCUU ....(((((..((..(((((.(((((...(((((..(((.....)))..)))...))...))))).)))))....))..)))))......... ( -35.50) >DroSec_CAF1 21285 93 - 1 UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGUUGCAAGCAGUGGUCUU ....((((((..(..(((((.(((((...(((((..(((.....)))..)))...))...))))).)))))....)..))))))......... ( -32.30) >DroEre_CAF1 25821 93 - 1 UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGUUGCAGGCAGUGGCUUU ..(((((.((((((((......))))))))))))).(((.....)))..((((((((...((((.(((((...))))))))).)))))))).. ( -37.30) >consensus UUAAGCUUGUGGUUGUGUGUGGGCGGCUACAGCUUUUGCAUGUUGCAUUAGCCAUUGAAACUGCUGACACAAAGUGUUGCAAGCAGUGGUCUU ....(((((..((..(((((.(((((...(((((..(((.....)))..)))...))...))))).)))))....))..)))))......... (-32.97 = -32.53 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:55 2006