Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 838,173 – 838,273 |
Length | 100 |
Max. P | 0.983539 |
Location | 838,173 – 838,273 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -23.41 |
Energy contribution | -23.93 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.28 |
Structure conservation index | 0.90 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 838173 100 + 22224390 --------------------GCAGUGGCAAUUUGCUAAUUUCGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCAUGCCGCGGGCGAU --------------------((.((((((....((..((((((((.....))))))))....))......((((((..((((((........)))..))).))))))))))))..))... ( -26.50) >DroSec_CAF1 39029 100 + 1 --------------------GCAGUGGCAAUUUGCUAAUUUCGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCAUGCCGCGGGCGAU --------------------((.((((((....((..((((((((.....))))))))....))......((((((..((((((........)))..))).))))))))))))..))... ( -26.50) >DroSim_CAF1 35276 100 + 1 --------------------GCAGUGGCAAUUUGCUAAUUUCGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCAUGCCGCGGGCGAU --------------------((.((((((....((..((((((((.....))))))))....))......((((((..((((((........)))..))).))))))))))))..))... ( -26.50) >DroEre_CAF1 38541 100 + 1 --------------------GCAGUGGCAAUUUGCUAAUUUCGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCAUGCCGCGGGCGAU --------------------((.((((((....((..((((((((.....))))))))....))......((((((..((((((........)))..))).))))))))))))..))... ( -26.50) >DroYak_CAF1 35883 100 + 1 --------------------GCAGUGGCAAUUUGCUAAUUUGGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCAUGCCGCGGGCGAU --------------------((.((((((..(((.(((...(..(((...((..(((((((.(((.(((...)))))).)))))))..)).)))..)))).)))...))))))..))... ( -24.70) >DroAna_CAF1 38000 120 + 1 CCACCUAAAACUACAAAAACCCAACAGCAAUUUGCUAAUUUCGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCACGCCGUGGGCGUG .(((...((((..............(((.....))).((((((((.....))))))))))))(((((...((((((..((((((........)))..))).)))))).....)))))))) ( -25.60) >consensus ____________________GCAGUGGCAAUUUGCUAAUUUCGAAUGCACUUCGAAAUGUUUGCCCAAUUUGGUUGGCCAACAUUUUAAAACAUGACUUGACAAUCAUGCCGCGGGCGAU ........................((((.....))))((((((((.....))))))))..((((((...((((....))))..........(((((........)))))....)))))). (-23.41 = -23.93 + 0.53)
Location | 838,173 – 838,273 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -27.25 |
Consensus MFE | -26.13 |
Energy contribution | -26.02 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.59 |
Structure conservation index | 0.96 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 838173 100 - 22224390 AUCGCCCGCGGCAUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCGAAAUUAGCAAAUUGCCACUGC-------------------- ...((((..(((((((((....)))))))))........((((....))))...))))....((((((((.....))))))))..((.....))......-------------------- ( -26.80) >DroSec_CAF1 39029 100 - 1 AUCGCCCGCGGCAUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCGAAAUUAGCAAAUUGCCACUGC-------------------- ...((((..(((((((((....)))))))))........((((....))))...))))....((((((((.....))))))))..((.....))......-------------------- ( -26.80) >DroSim_CAF1 35276 100 - 1 AUCGCCCGCGGCAUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCGAAAUUAGCAAAUUGCCACUGC-------------------- ...((((..(((((((((....)))))))))........((((....))))...))))....((((((((.....))))))))..((.....))......-------------------- ( -26.80) >DroEre_CAF1 38541 100 - 1 AUCGCCCGCGGCAUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCGAAAUUAGCAAAUUGCCACUGC-------------------- ...((((..(((((((((....)))))))))........((((....))))...))))....((((((((.....))))))))..((.....))......-------------------- ( -26.80) >DroYak_CAF1 35883 100 - 1 AUCGCCCGCGGCAUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCCAAAUUAGCAAAUUGCCACUGC-------------------- .......(((((((((((....))))))))((..((((((((.((((.....)))).).)))))))..)).)))...........((.....))......-------------------- ( -22.50) >DroAna_CAF1 38000 120 - 1 CACGCCCACGGCGUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCGAAAUUAGCAAAUUGCUGUUGGGUUUUUGUAGUUUUAGGUGG ((((((((.(((((((((....)))))))))........((((....))))..)))))((((((((((((.....))))))))..(((((..(((....))).))))).))))...))). ( -33.80) >consensus AUCGCCCGCGGCAUGAUUGUCAAGUCAUGUUUUAAAAUGUUGGCCAACCAAAUUGGGCAAACAUUUCGAAGUGCAUUCGAAAUUAGCAAAUUGCCACUGC____________________ ...(((((.(((((((((....)))))))))........((((....))))..)))))....((((((((.....))))))))..((.....)).......................... (-26.13 = -26.02 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:55 2006