Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,583,396 – 6,583,516 |
Length | 120 |
Max. P | 0.978890 |
Location | 6,583,396 – 6,583,516 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -32.05 |
Consensus MFE | -27.60 |
Energy contribution | -27.12 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.18 |
Mean z-score | -1.93 |
Structure conservation index | 0.86 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6583396 120 + 22224390 GGAUCGUUGAUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUAGAUUGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU .........((((((((.((((.(((((...((....))((((.(((((......))))).)))).))))).............((((((((.....))))))))))))...)))))))) ( -32.60) >DroSec_CAF1 27687 113 + 1 GG-------AUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUAGACUGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU ..-------((((((((.((((.(((((...((....))((((.(((((......))))).)))).))))).............((((((((.....))))))))))))...)))))))) ( -35.10) >DroSim_CAF1 39793 120 + 1 GGAUCGUGGAUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUACACGGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU .........((((((((((.(((((..((.(((....).)).))(((((......))))).......)))))...)).........(((((((........)))))))....)))))))) ( -34.60) >DroEre_CAF1 27087 113 + 1 GG-------AUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUUGUGCGAAAGAGUGCGCAAUACAAUAGGCAGAACGAGACGGAAUGCAAGGAAAAUUUGUUUUGCCAAAAUUGAAAAU ..-------(((((((((((.....(((...((....)))))(((((((......)))))))))))...(((((((((((.................))))))))))).....))))))) ( -27.93) >DroYak_CAF1 38448 113 + 1 GG-------AUUUUCUUGUGGCCCCCAAAAAGCGAAAGUCUGUCGUGCGAACGAGUGCGCAAUAGAAUGGAUAGAACGAGACGGAGCGCAAGGAAAAUUUGUUUUGCCAAGAGGGAAAAU ..-------((((((((.((((..(((.....(....)(((((.(((((......))))).))))).))).......((((((((.(....).....))))))))))))...)))))))) ( -30.00) >consensus GG_______AUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUAGAAUGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU .........((((((((.((((..((......(....)(((((((((((......))))).........)))))).......))((((((((.....))))))))))))...)))))))) (-27.60 = -27.12 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:30 2006