Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,582,011 – 6,582,164 |
Length | 153 |
Max. P | 0.763047 |
Location | 6,582,011 – 6,582,124 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -29.55 |
Consensus MFE | -27.69 |
Energy contribution | -27.62 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.42 |
Structure conservation index | 0.94 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6582011 113 - 22224390 CGGCGAAUGCGACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUCGUAUUGAAAUCGCAUGG ..((((((((.(((.(((((((((((((......)))))))))((....(..((((((......))))))..)..)).....)))).)))))))))))............... ( -30.50) >DroSec_CAF1 26351 112 - 1 CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUAUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUUGAACUGAAAUUG-AUGG ...((((((((.((.((((....((((...((((((((....))))..))))((((((......)))))).....))))...)))).))))))))))...........-.... ( -27.00) >DroSim_CAF1 38417 112 - 1 CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUUGUACUGAAAUUG-AUGG .((((((((((.((.(((((((((((((......)))))))))((....(..((((((......))))))..)..)).....)))).)))))))))))).........-.... ( -28.90) >DroYak_CAF1 37076 111 - 1 CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGCACUU--AAGGGGUGUAUUUGUACUGCAAUCGCAUGG .(((((.((((........(((((((((......)))))))))((((..(((((((((......)))))..))))(((((.--....)))))..))))..)))).)))))... ( -31.80) >consensus CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUUGUACUGAAAUCG_AUGG ..(((((((((.((.(((((((((((((......)))))))))((....(..((((((......))))))..)..)).....)))).)))))))))))............... (-27.69 = -27.62 + -0.06)
Location | 6,582,047 – 6,582,164 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.51 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -26.94 |
Energy contribution | -26.94 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.62 |
Structure conservation index | 0.80 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6582047 117 - 22224390 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUACGGGCGGCGAAUGCGACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGU (((..((((.(.(((.((((((....))))))..))).).))))(((((((..(((...(((((---((((......)))))))))))).((.((.....)).)))))))))..)))... ( -31.60) >DroSec_CAF1 26386 117 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUCUCUGCGGGCUGCGAAUGCAACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUAUGAAUGAUCACGUAUUCAAGGAGGU (((......(((((((((((((.......))))))))..)))))((((((....((..((((((---((((......))))))))))....))..(((....))).))))))..)))... ( -35.50) >DroSim_CAF1 38452 117 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUCUCUGCGCGCUGCGAAUGCAACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGU (((..((.(((.((((((((((.......)))))))))))))))((((((...(((...(((((---((((......)))))))))))).((.((.....)).)).))))))..)))... ( -37.90) >DroEre_CAF1 25763 102 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUGCUGGCUGCGAAUGCAACUGCUUUAAUUGUUGUUUAAUUAGCUGCAUAAUUGCAA------------UCACGUAUUCAA------ ...((((..((((...((((((....)))))).))))..)).))((((((....(((..(((((.....))))))))((((....)))).------------....))))))..------ ( -28.60) >DroYak_CAF1 37110 117 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUGCGGGCUGCGAAUGCAACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGC .....(((.(((((((((..((.......))..))))..)))))((((((...(((...(((((---((((......)))))))))))).((.((.....)).)).)))))).....))) ( -33.90) >consensus UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUGCGGGCUGCGAAUGCAACUGCUUUAAUUG___UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGU .........(((((((((((((.......))))))))..)))))((((((....(((..(((((.....))))))))((((....)))).................))))))........ (-26.94 = -26.94 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:28 2006