Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,573,114 – 6,573,233 |
Length | 119 |
Max. P | 0.895786 |
Location | 6,573,114 – 6,573,233 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.22 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -25.38 |
Energy contribution | -26.34 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.11 |
Mean z-score | -1.71 |
Structure conservation index | 0.83 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6573114 119 + 22224390 CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAACCCGACGAGAA-UUCGAAAAUUCAAUUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA .....((((..(((.((......)).....((((.((((((.....))))))((((((-(((((((......))))))))....)))))...........))))..)))..))))..... ( -31.50) >DroSec_CAF1 17930 119 + 1 CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAACCCGAUGAGAA-UUCGAAAACUCAAUUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA .....((((..(((.((......)).....(((((((((((.....)))))))(((.(-(((((((......))))))))..)))...............))))..)))..))))..... ( -32.70) >DroSim_CAF1 28522 119 + 1 CAUAACGAUAACUGAACUUAAGCGUAACUGGCCGAUCGGGUGACAAACCCGAUGAGAA-UUCGAAAACUCAAUUUCGAGUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA .....((((..(((.((......)).....(((((((((((.....)))))))(((.(-(((((((......))))))))..)))...............))))..)))..))))..... ( -32.70) >DroEre_CAF1 17583 119 + 1 CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAAUCCGAUGAUAA-UUCGAAAAUUCAACUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA .....((((..(((.((......)).....(((((((((((.....)))))))....(-((((((........)))))))....................))))..)))..))))..... ( -28.40) >DroYak_CAF1 27489 120 + 1 CAUAACGUUAUCCGAACUUAAACGUAACUGGCCGAUCGGGUGACAAUGCCGAUGAUUAUUUUGAAAAUUCAACUUCGAAUCCCUUUUUGUGAACAAUUAACGGCAGCAGGCAUCGGCUUA ......(((((((((.(................).)))))))))...(((((((.....((((((........)))))).((.((.(((....)))..)).)).......)))))))... ( -27.19) >consensus CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAACCCGAUGAGAA_UUCGAAAAUUCAAUUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA .....((((..(((.((......)).....(((((((((((.....)))))))......(((((((......))))))).....................))))..)))..))))..... (-25.38 = -26.34 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:15 2006