Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,550,571 – 6,550,691 |
Length | 120 |
Max. P | 0.706828 |
Location | 6,550,571 – 6,550,691 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -24.53 |
Consensus MFE | -23.80 |
Energy contribution | -23.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.97 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6550571 120 + 22224390 CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCGAUUUGCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG ......((((((((.....((..((.((((.....((..(((((.(((.......))).)))))..))...)))).)).))....)))))....((((((......)))))).....))) ( -24.90) >DroSim_CAF1 5587 120 + 1 CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCGAUUUGCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG ......((((((((.....((..((.((((.....((..(((((.(((.......))).)))))..))...)))).)).))....)))))....((((((......)))))).....))) ( -24.90) >DroYak_CAF1 5653 120 + 1 CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCAAUAUCCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG .......((((..(((....))).))))..(((((((..(((((.(((.......))).)))))..............................((((((......)))))).))))))) ( -23.80) >consensus CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCGAUUUGCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG .......((((..(((....))).))))..(((((((..(((((.(((.......))).)))))..............................((((((......)))))).))))))) (-23.80 = -23.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:33 2006