Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 835,638 – 835,776 |
Length | 138 |
Max. P | 0.741401 |
Location | 835,638 – 835,755 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.29 |
Mean single sequence MFE | -34.74 |
Consensus MFE | -24.70 |
Energy contribution | -26.14 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.65 |
Structure conservation index | 0.71 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 835638 117 + 22224390 CACAUUAUGCUAAUGUCGUGUAAUUUUGUGUGCACAAGGAGCGGCAUUAGGGAUCCAAAGGGGGCUUUCGGAGGGAGUUCUCGGUGGGUUCUCGGUGGGUAGGACCCAUUUGAGAAC .......(.((((((((((....((((((....)))))).)))))))))).)..(((..(((((((((.....)))))))))..)))((((((((((((.....)))).)))))))) ( -45.90) >DroSec_CAF1 36539 93 + 1 CACAUUAUGCUAAUGUCGUGUAAUUUUGUGUGCACAAGGAGCGGCAUUAGGGAUCCAAAGGGGG-------------UUCU-----------CGGUGGGUAGGACACAUUUGAGGAC .......(.((((((((((....((((((....)))))).)))))))))).).(((....)))(-------------((((-----------(.(((.......)))....)))))) ( -25.60) >DroSim_CAF1 32943 104 + 1 CACAUUAUGCUAAUGUCGUGUAAUUUUGUGUGCACAAGGAGCGGCAUUAGGGAUCCAAAGGGGG-------------UUCUCGGUGGGUUCUCGGUGGGUAGGACACAUUUGAGGAC (((......((((((((((....((((((....)))))).))))))))))((((((.....)))-------------)))...))).((((((.(((.......)))....)))))) ( -33.00) >DroEre_CAF1 36032 105 + 1 CACAUUAUGCUAAUGUCGUGUAAUUUUGUGUGCACAAGGAGCGGCAUUAGGGAUGCGAAGG-GGCUUUCAG-----------GGGAGGUUCUCGUUGGGUAGGACCCAUUUGAGGAC (.((((...((((((((((....((((((....)))))).)))))))))).)))).)....-..((((...-----------.))))(((((((.((((.....))))..))))))) ( -33.10) >DroYak_CAF1 33295 109 + 1 CACAUUAUGCUAAUGUCGUGUAAUUUUGUGUGCACAAGGAGCGGCAUUAGGGUUGCGAGGGCGGCUUUCAGAGG--------GGGGGGUUCUCGGUGGGUAAAACCCAUUUGAGGAC .........((((((((((....((((((....)))))).))))))))))((((((....))))))........--------.....((((((((((((.....)))).)))))))) ( -36.10) >consensus CACAUUAUGCUAAUGUCGUGUAAUUUUGUGUGCACAAGGAGCGGCAUUAGGGAUCCAAAGGGGGCUUUC_G______UUCU_GGGGGGUUCUCGGUGGGUAGGACCCAUUUGAGGAC .......(.((((((((((....((((((....)))))).)))))))))).).(((....)))........................((((((((((((.....)))).)))))))) (-24.70 = -26.14 + 1.44)
Location | 835,678 – 835,776 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.70 |
Mean single sequence MFE | -16.90 |
Consensus MFE | -9.72 |
Energy contribution | -10.48 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.58 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 835678 98 - 22224390 ACCACCCACCACUUGGCAUACGUUCUCAAAUGGGUCCUACCCACCGAGAACCCACCGAGAACUCCCUCCGAAAGCCCCCUUUGGAUCCCUAAUGCCGC ..............(((((..((((((...(((((.((........)).)))))..))))))....((((((.......))))))......))))).. ( -27.00) >DroSec_CAF1 36579 74 - 1 ACCACCCACCACUUGGCAUACGUCCUCAAAUGUGUCCUACCCACCG-----------AGAA-------------CCCCCUUUGGAUCCCUAAUGCCGC ..............(((((((((......))))..........(((-----------((..-------------.....))))).......))))).. ( -10.50) >DroSim_CAF1 32983 85 - 1 ACCACCCACCACUUGGCAUACGUCCUCAAAUGUGUCCUACCCACCGAGAACCCACCGAGAA-------------CCCCCUUUGGAUCCCUAAUGCCGC ..............(((((..((.(((....(((.......))).))).))...(((((..-------------.....))))).......))))).. ( -13.10) >DroEre_CAF1 36072 86 - 1 ACCACCCACCACUUGGCAUACGUCCUCAAAUGGGUCCUACCCAACGAGAACCUCCC-----------CUGAAAGCC-CCUUCGCAUCCCUAAUGCCGC ..............(((((..((.(((...((((.....))))..))).)).....-----------......((.-.....)).......))))).. ( -17.00) >DroYak_CAF1 33335 90 - 1 ACCACCCACCACUUGGCAUACGUCCUCAAAUGGGUUUUACCCACCGAGAACCCCCC--------CCUCUGAAAGCCGCCCUCGCAACCCUAAUGCCGC ..............(((((..((.(((...((((.....))))..))).)).....--------............((....)).......))))).. ( -16.90) >consensus ACCACCCACCACUUGGCAUACGUCCUCAAAUGGGUCCUACCCACCGAGAACCCACC_AGAA______C_GAAAGCCCCCUUUGGAUCCCUAAUGCCGC ..............(((((.....(((...((((.....))))..)))............................((....)).......))))).. ( -9.72 = -10.48 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:48 2006