Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,541,822 – 6,541,938 |
Length | 116 |
Max. P | 0.995641 |
Location | 6,541,822 – 6,541,938 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -24.29 |
Energy contribution | -24.07 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.33 |
Structure conservation index | 0.92 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6541822 116 + 22224390 AUUU-UUGAAUGUUAUAGCAAGUUUCGCCCGAGGAUUUCCUCGAAAGGCACUUGUUGCCUCGUCCAUCCGCGAUGCUCAGUAAUUAUUUUAAUAUUUAGUUUUUCGGGUUUCUUUUU ....-((((((((((.(((((((...((((((((....)))))...))))))))))((.((((......)))).)).............)))))))))).................. ( -28.30) >DroEre_CAF1 14731 113 + 1 AUUUUUUGAAUGUUAUAGCAAGUUUCGCCCGAGGAUUUCCUCGAAAGGCACUUGUUGCCUCGUCCAUCCGCGAUGCUCAAUAAUUAUUUUUAU----AGUUUUUCGGGUUUCUUCUU ......((.(((...((((((((...((((((((....)))))...)))))))))))...))).)).....((.((((((.((((((....))----)))).)).)))).))..... ( -26.50) >DroYak_CAF1 14295 108 + 1 AUUU-UUGAAUGUUAUAGCAAGUUUCGCCCGAGGACUUCCUCGAAAGGCACUUGUUGCCUCGUCCAUUCGCGAUGCUCAAUAAUUUUUUUUCU----UUUUUUUUGGUUUU----UU ....-((((.......(((((((...((((((((....)))))...))))))))))((.((((......)))).)))))).............----..............----.. ( -24.30) >consensus AUUU_UUGAAUGUUAUAGCAAGUUUCGCCCGAGGAUUUCCUCGAAAGGCACUUGUUGCCUCGUCCAUCCGCGAUGCUCAAUAAUUAUUUUUAU____AGUUUUUCGGGUUUCUU_UU .....((((.......(((((((...((((((((....)))))...))))))))))((.((((......)))).))))))..................................... (-24.29 = -24.07 + -0.22)
Location | 6,541,822 – 6,541,938 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -24.40 |
Energy contribution | -24.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 1.00 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6541822 116 - 22224390 AAAAAGAAACCCGAAAAACUAAAUAUUAAAAUAAUUACUGAGCAUCGCGGAUGGACGAGGCAACAAGUGCCUUUCGAGGAAAUCCUCGGGCGAAACUUGCUAUAACAUUCAA-AAAU ........................................((((((((........((((((.....))))))((((((....))))))))))....))))...........-.... ( -24.40) >DroEre_CAF1 14731 113 - 1 AAGAAGAAACCCGAAAAACU----AUAAAAAUAAUUAUUGAGCAUCGCGGAUGGACGAGGCAACAAGUGCCUUUCGAGGAAAUCCUCGGGCGAAACUUGCUAUAACAUUCAAAAAAU ....................----................((((((((........((((((.....))))))((((((....))))))))))....))))................ ( -24.40) >DroYak_CAF1 14295 108 - 1 AA----AAAACCAAAAAAAA----AGAAAAAAAAUUAUUGAGCAUCGCGAAUGGACGAGGCAACAAGUGCCUUUCGAGGAAGUCCUCGGGCGAAACUUGCUAUAACAUUCAA-AAAU ..----..............----................((((((((........((((((.....))))))((((((....))))))))))....))))...........-.... ( -24.40) >consensus AA_AAGAAACCCGAAAAACU____AUAAAAAUAAUUAUUGAGCAUCGCGGAUGGACGAGGCAACAAGUGCCUUUCGAGGAAAUCCUCGGGCGAAACUUGCUAUAACAUUCAA_AAAU ........................................((((((((........((((((.....))))))((((((....))))))))))....))))................ (-24.40 = -24.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:26 2006