Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,482,266 – 6,482,365 |
Length | 99 |
Max. P | 0.720708 |
Location | 6,482,266 – 6,482,365 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.46 |
Mean single sequence MFE | -27.87 |
Consensus MFE | -19.80 |
Energy contribution | -19.63 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.95 |
Structure conservation index | 0.71 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6482266 99 + 22224390 GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA-AACUCUUAACUCUUU ((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..))))))))))..-............... ( -27.10) >DroPse_CAF1 43376 86 + 1 AGGCCGUGUCCAAUCCGAUUUUGACUUUAUUAACGCUGCAAUUUGUAGCGACCACUGGCAGUCCGGACGGGAACGGCAGUCAUA-GU------------- ..(((((.(((..((((...(((.((.......((((((.....))))))......)))))..))))..)))))))).......-..------------- ( -29.52) >DroSim_CAF1 34814 99 + 1 GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA-AACUCUUAACUCUUU ((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..))))))))))..-............... ( -27.10) >DroEre_CAF1 35712 100 + 1 GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGAAAACUCUUAACUCUUU ((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..)))))))))).................. ( -27.10) >DroYak_CAF1 36334 99 + 1 GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA-AACUCUUAACUCUUU ((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..))))))))))..-............... ( -27.10) >DroPer_CAF1 45689 86 + 1 AGGCCGUGUCCAAUCCGAUUUUGACUUUAUUAACGCUGCAAUUUGUAGCGACCACUGGCAGUCCGGACGGGAUCGGCAGUCAGA-GU------------- ..((((.((((..((((...(((.((.......((((((.....))))))......)))))..))))..)))))))).......-..------------- ( -29.32) >consensus GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA_AACUCUUAACUCUUU .......(((.((......)).)))........((((((.....))))))...((((((((..(.....)..)))))))).................... (-19.80 = -19.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:06 2006