Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,462,594 – 6,462,701 |
Length | 107 |
Max. P | 0.853172 |
Location | 6,462,594 – 6,462,701 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -12.86 |
Consensus MFE | -10.02 |
Energy contribution | -10.06 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.93 |
Structure conservation index | 0.78 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6462594 107 + 22224390 UCCAACGAUUUCGAUACGUUUCAAAUUGCAAAAACAGCAAAAAAAAAACACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACACACAC ........((((((......))...((((.......))))...............))))....(((.....)))............((((.....))))........ ( -12.60) >DroSec_CAF1 16978 104 + 1 UCCAACGAUUUCGAUUCGUUUCAAAUUGCAAAAACAGCAAAAAAAAA-AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACA--CAC ...(((((.......))))).....((((.......)))).......-...............(((.....)))............((((.....))))...--... ( -13.40) >DroSim_CAF1 17468 99 + 1 UCCAACGAUUUCGAUUCGUUUCAAAUUGCAAAAACAGCAAAAA--AA-AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACA----- ........((((...((((((....((((.......))))...--.)-))).)).))))....(((.....)))............((((.....))))...----- ( -13.60) >DroEre_CAF1 16240 86 + 1 GCCAACGGUUUCGAUUCGUUUCAAAUUGCAAA----------------AACAGAAGAAAAAAAGGUUAUUUACCAACUUACUCAAAGUGCAUUAAGCACACA----- .....((((((.((......))))))))....----------------...............(((.....)))............((((.....))))...----- ( -10.50) >DroYak_CAF1 17039 95 + 1 UCCAACGAUUCCGAUUCGUUUCAAAUUGCAAAAACAGCAAA-------AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUGAAAGUGCAUUAAGCACACA----- ...(((((.......)))))(((..((((.......)))).-------...............(((.....))).......)))..((((.....))))...----- ( -14.20) >consensus UCCAACGAUUUCGAUUCGUUUCAAAUUGCAAAAACAGCAAAAA__AA_AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACA_____ .....((((((.((......))))))))...................................(((.....)))............((((.....))))........ (-10.02 = -10.06 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:53 2006