Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,454,898 – 6,454,990 |
Length | 92 |
Max. P | 0.873308 |
Location | 6,454,898 – 6,454,990 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.64 |
Mean single sequence MFE | -24.09 |
Consensus MFE | -9.98 |
Energy contribution | -9.66 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.10 |
Structure conservation index | 0.41 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6454898 92 - 22224390 UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAGGUAGCCAAAUGAGUUACCUGCC-----AGAU-----------------------AUUGUAGAUGAACCUC ..((((((((.......)))))))).(((((((...((((((......((((((((....).)))))))...-----))))-----------------------)).)))))))...... ( -25.20) >DroSec_CAF1 9430 92 - 1 UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAAGUAACCAAAUGAGUUACCUGCC-----AGAU-----------------------AUUGUAGAUGAUCCUC ...................(((((((.((((((...((((((........((((((....).))))).....-----))))-----------------------)).))))))))))))) ( -22.52) >DroSim_CAF1 9397 92 - 1 UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAAGUAACCAAAUGAGCUACCUGCC-----AGAU-----------------------AUGGUAGAUGAUCCUC ...................(((((((.(((((((..(((((((((....))))......((.((.....)))-----))))-----------------------)))))))))))))))) ( -22.00) >DroEre_CAF1 8677 119 - 1 UUAUCCUUAACCUUUGUUAGGGGAU-CAUCUAUUUUGUUUCUACUUUGAAAUACCCAAAUGAGUUACCUGCCUGCCAAAAGGAUGAAAUGCUAUUUCUUUUUUGAGUAAAGACGAUCCUC .....((((((....))))))((((-(.(((....((((((......))))))...................(((((((((...(((((...))))).)))))).))).))).))))).. ( -22.20) >DroYak_CAF1 9662 114 - 1 UUAUCCUUUACCUUUGUUAGGGGAU-CAUCUAUUUUGUGUCUACUUUAAAAUACCCACAUGAGUUACCUGCC-----AGAGGGUGAGAUCCUAGUUCUUUAUGGAGUAAAGAUGAUCCUC ...................((((((-(((((((((..((...(((......(((((...((.((.....)))-----)..))))).......)))....))..))))..))))))))))) ( -28.52) >consensus UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAAGUAACCAAAUGAGUUACCUGCC_____AGAU_______________________AUUGUAGAUGAUCCUC ...................((((((.(((((((((((.........))))))).........((.....)).......................................)))))))))) ( -9.98 = -9.66 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:48 2006