Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,448,591 – 6,448,701 |
Length | 110 |
Max. P | 0.914791 |
Location | 6,448,591 – 6,448,701 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -20.24 |
Energy contribution | -20.08 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.77 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6448591 110 + 22224390 CGACAAAUGACAAAUGACGCGGCUAUAUGCAUAUAGUAUGUAUCCAUCCAUAUAUGGAUUUCCAUAAAAUAUGUCAUUCGACCAGGGAUAAGGUU--CCAGAUCCAGUUUUA (((...((((((........((.(((((((.....))))))).)).......(((((....))))).....))))))))).....((((..(...--.)..))))....... ( -25.70) >DroSec_CAF1 6099 110 + 1 CGACAAAUGACAAAUGACGCGGCUAUAUGCAUAUAGUAUGUAU--AUCCAUAUAUGGAUUUCCAUAAAAUAUGUCAUUCGACCAGGGAUAAGGUUCUCCAGAUCCAGUUUUA (((...((((((........((..(((((((((...)))))))--))))...(((((....))))).....))))))))).....((((..((....))..))))....... ( -26.50) >DroSim_CAF1 6102 110 + 1 CGACGAAUGACAAAUGACGCGGCUAUAUGCAUAUAGUAUGUAU--AUCCAUAUAUGGAUUUCCAUAAAAUAUGUCAUUCGACCAGGGAUAAGGUUCUCCAGAUCCAGUUUUA ...(((((((((........((..(((((((((...)))))))--))))...(((((....))))).....))))))))).....((((..((....))..))))....... ( -32.10) >DroEre_CAF1 5668 99 + 1 CGACAAAUGACAAAUGACGCGGCUAUAUGCAU---------AC--AUCCAUAUAUGGAUGUCCGUAACAUAUGUCAUACGACCAGGGAUAAGGUU--CCAGAUCCAGUUUUA .(((..((((((.(((..(((((.....))..---------((--(((((....))))))).)))..))).))))))........((((..(...--.)..)))).)))... ( -26.40) >DroYak_CAF1 6438 103 + 1 CGACAAAUGACAAAUGUCGCGGCUAUAUGCAUA-----UGCAC--AUCCAUAUAUGGAUUUCCAUAAAAUAUGUCAUACGACCAGGGAUAAGGUU--CCAGAUCCAGUUUUA .(((..((((((.((((.((.((.....))...-----.))))--)).....(((((....))))).....))))))........((((..(...--.)..)))).)))... ( -21.40) >consensus CGACAAAUGACAAAUGACGCGGCUAUAUGCAUAUAGUAUGUAU__AUCCAUAUAUGGAUUUCCAUAAAAUAUGUCAUUCGACCAGGGAUAAGGUU__CCAGAUCCAGUUUUA .(((..((((((......(((......)))......................(((((....))))).....))))))........((((..((....))..)))).)))... (-20.24 = -20.08 + -0.16)
Location | 6,448,591 – 6,448,701 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -20.82 |
Energy contribution | -21.46 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.79 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6448591 110 - 22224390 UAAAACUGGAUCUGG--AACCUUAUCCCUGGUCGAAUGACAUAUUUUAUGGAAAUCCAUAUAUGGAUGGAUACAUACUAUAUGCAUAUAGCCGCGUCAUUUGUCAUUUGUCG .......((((..(.--...)..)))).(((.((((((((((((..((((...((((((......)))))).))))..))))((........)))))))))))))....... ( -26.10) >DroSec_CAF1 6099 110 - 1 UAAAACUGGAUCUGGAGAACCUUAUCCCUGGUCGAAUGACAUAUUUUAUGGAAAUCCAUAUAUGGAU--AUACAUACUAUAUGCAUAUAGCCGCGUCAUUUGUCAUUUGUCG .......((((..((....))..))))...(.(((((((((.......(((....)))((((((.((--(((.....))))).))))))...........))))))))).). ( -27.30) >DroSim_CAF1 6102 110 - 1 UAAAACUGGAUCUGGAGAACCUUAUCCCUGGUCGAAUGACAUAUUUUAUGGAAAUCCAUAUAUGGAU--AUACAUACUAUAUGCAUAUAGCCGCGUCAUUUGUCAUUCGUCG .......((((..((....))..))))...(.(((((((((.......(((....)))((((((.((--(((.....))))).))))))...........))))))))).). ( -29.40) >DroEre_CAF1 5668 99 - 1 UAAAACUGGAUCUGG--AACCUUAUCCCUGGUCGUAUGACAUAUGUUACGGACAUCCAUAUAUGGAU--GU---------AUGCAUAUAGCCGCGUCAUUUGUCAUUUGUCG ........((((.((--(......)))..))))..((((((.(((...((((((((((....)))))--))---------..........)))...))).))))))...... ( -24.60) >DroYak_CAF1 6438 103 - 1 UAAAACUGGAUCUGG--AACCUUAUCCCUGGUCGUAUGACAUAUUUUAUGGAAAUCCAUAUAUGGAU--GUGCA-----UAUGCAUAUAGCCGCGACAUUUGUCAUUUGUCG .......((((..(.--...)..))))..(((((((((.((((((((((((....)))))...))))--)))))-----))))......))).(((((.........))))) ( -25.00) >consensus UAAAACUGGAUCUGG__AACCUUAUCCCUGGUCGAAUGACAUAUUUUAUGGAAAUCCAUAUAUGGAU__AUACAUACUAUAUGCAUAUAGCCGCGUCAUUUGUCAUUUGUCG .......((((..((....))..))))...(.(((((((((.....(((((....)))))....................((((........))))....))))))))).). (-20.82 = -21.46 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:47 2006