Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,359,621 – 6,359,732 |
Length | 111 |
Max. P | 0.870755 |
Location | 6,359,621 – 6,359,732 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.02 |
Mean single sequence MFE | -27.87 |
Consensus MFE | -21.68 |
Energy contribution | -22.47 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.17 |
Mean z-score | -1.27 |
Structure conservation index | 0.78 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6359621 111 + 22224390 CUUCGCCGUUUUGUAAA--AAAAAAAAAAAGCGAGU-------GGCCUAAUCAUUGAAAGCAACGACUUCCAAAUGAGCCAUUCCAGCAUUAUGAAUGGCCGGGGCCAUCAAGUGUAACU ..((((..((((.....--.....))))..))))((-------(((((..(((((..(((......)))...)))))(((((((.........)))))))..)))))))........... ( -28.90) >DroSec_CAF1 43553 120 + 1 CUUCACAGUUUUGUAAAGUAAAAUAAAAAAGGGAGUGGGUGGUGGCCUAAUCAUUGAAAGCAACGACUUCCAAAUGAGCUAUUCCAGCAUUAUGAACGGCCGGGGCCAUCAAGUGUAACU ((((....((((((........))))))...))))....(((((((((..(((((..(((......)))...)))))((..(((.........)))..))..)))))))))......... ( -26.20) >DroEre_CAF1 41349 97 + 1 -----------------------UAUAUUUGGUAUUGGGCGGUGGCCUAAUCAUUCAAGGCAACGACUUCUAAAUGAGCUAUUCCAGCAUUAUGAAUGGCCGAGGCCAUCGAGUGUAACU -----------------------(((((((((((((((((....))))))).......(((..((...((.....))(((((((.........)))))))))..)))))))))))))... ( -28.50) >consensus CUUC_C_GUUUUGUAAA__AAAAUAAAAAAGGGAGUGGG_GGUGGCCUAAUCAUUGAAAGCAACGACUUCCAAAUGAGCUAUUCCAGCAUUAUGAAUGGCCGGGGCCAUCAAGUGUAACU .......................................(((((((((..(((((..(((......)))...)))))(((((((.........)))))))..)))))))))......... (-21.68 = -22.47 + 0.79)
Location | 6,359,621 – 6,359,732 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.02 |
Mean single sequence MFE | -26.53 |
Consensus MFE | -18.56 |
Energy contribution | -18.79 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -1.20 |
Structure conservation index | 0.70 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6359621 111 - 22224390 AGUUACACUUGAUGGCCCCGGCCAUUCAUAAUGCUGGAAUGGCUCAUUUGGAAGUCGUUGCUUUCAAUGAUUAGGCC-------ACUCGCUUUUUUUUUUU--UUUACAAAACGGCGAAG ............(((((...(((((((.........)))))))(((((.((((((....)))))))))))...))))-------).(((((.((((.(...--...).)))).))))).. ( -31.30) >DroSec_CAF1 43553 120 - 1 AGUUACACUUGAUGGCCCCGGCCGUUCAUAAUGCUGGAAUAGCUCAUUUGGAAGUCGUUGCUUUCAAUGAUUAGGCCACCACCCACUCCCUUUUUUAUUUUACUUUACAAAACUGUGAAG .........((.((((((((((..........)))))......(((((.((((((....)))))))))))...))))).)).....................(((((((....))))))) ( -28.30) >DroEre_CAF1 41349 97 - 1 AGUUACACUCGAUGGCCUCGGCCAUUCAUAAUGCUGGAAUAGCUCAUUUAGAAGUCGUUGCCUUGAAUGAUUAGGCCACCGCCCAAUACCAAAUAUA----------------------- .....((.((((.(((..((((..(((.(((.((((...))))....))))))))))..))))))).))(((.(((....))).)))..........----------------------- ( -20.00) >consensus AGUUACACUUGAUGGCCCCGGCCAUUCAUAAUGCUGGAAUAGCUCAUUUGGAAGUCGUUGCUUUCAAUGAUUAGGCCACC_CCCACUCCCUUUUUUAUUUU__UUUACAAAAC_G_GAAG (((.......((((((....))))))......)))((..(((.(((((.((((((....))))))))))))))..))........................................... (-18.56 = -18.79 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:15 2006