Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 818,711 – 818,850 |
Length | 139 |
Max. P | 0.857475 |
Location | 818,711 – 818,810 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.64 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -25.83 |
Energy contribution | -26.58 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.90 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 818711 99 + 22224390 ---------UCCCUUUCCCUUCCUGCUUUGUCCUGGACUGUACUGGCUGUCUGUCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUA ---------.(((......(((((..((((..((((((......(((.....)))..))))))))))..))))).....)))((.....))................. ( -23.00) >DroSec_CAF1 20050 95 + 1 ---------UCCCUUUCCCUUCCUGCUUUGUCCUGGGCUGUCCUGGCUG----UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUA ---------..............(((...((((((((.((((((.((((----.......))))......)))))))))))))).....)))................ ( -31.40) >DroSim_CAF1 16372 95 + 1 ---------UCCCUUUCCCUUCCUGCUUUGUCCUGGGCUGUCCUGGCUG----UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUA ---------..............(((...((((((((.((((((.((((----.......))))......)))))))))))))).....)))................ ( -31.40) >DroEre_CAF1 20197 103 + 1 CAUUCCCAUUCCCAUUCCCGUCCUGCUUUGUCCUGGGCUGUCC-GGCUG----UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUACUGCAAUUUGUUGAAUUAAUA .............((((.((...(((...((((((((.(((((-.((((----.......)))).......))))))))))))).....)))...))..))))..... ( -28.70) >consensus _________UCCCUUUCCCUUCCUGCUUUGUCCUGGGCUGUCCUGGCUG____UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUA .......................(((...((((((((.((((((.((((...........))))......)))))))))))))).....)))................ (-25.83 = -26.58 + 0.75)
Location | 818,730 – 818,850 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.34 |
Mean single sequence MFE | -33.35 |
Consensus MFE | -30.88 |
Energy contribution | -31.50 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.06 |
Mean z-score | -1.48 |
Structure conservation index | 0.93 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 818730 120 + 22224390 UGUCCUGGACUGUACUGGCUGUCUGUCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUAACAACACUCAGUCCUUUGAAAAUUGAAUUUAUAGAGUGAA .(((((((........(((.....))).(((((..........))))).)))))))..........((((((......))))))(((((.((..((..(...)..))...)).))))).. ( -25.10) >DroSec_CAF1 20069 116 + 1 UGUCCUGGGCUGUCCUGGCUG----UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUAACAACACUCAGUGCUUUGAAAAUUGAAUUUAGAGAGUGAA .((((((((.((((((.((((----.......))))......))))))))))))))..((((....((((((......))))))....)))).(((((((.......)))))))...... ( -37.10) >DroSim_CAF1 16391 116 + 1 UGUCCUGGGCUGUCCUGGCUG----UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUAACAACACUCAGUGCUUUGAAAAUUGAAUUUAGAGAGUGAA .((((((((.((((((.((((----.......))))......))))))))))))))..((((....((((((......))))))....)))).(((((((.......)))))))...... ( -37.10) >DroEre_CAF1 20225 115 + 1 UGUCCUGGGCUGUCC-GGCUG----UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUACUGCAAUUUGUUGAAUUAAUAACAACACUCAGUGCUUUGGAAAUUGAAUUUAGAGAGUGAA .((((((((.(((((-.((((----.......)))).......))))))))))))).(((((....((((((......))))))....)))))(((((((.......)))))))...... ( -34.10) >consensus UGUCCUGGGCUGUCCUGGCUG____UCUUGUCCAGCAAAAAAGGGACACCCGGGGCUUGCUGCAAUUUGUUGAAUUAAUAACAACACUCAGUGCUUUGAAAAUUGAAUUUAGAGAGUGAA .((((((((.((((((.((((...........))))......))))))))))))))..((((....((((((......))))))....)))).(((((((.......)))))))...... (-30.88 = -31.50 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:42 2006