Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,338,894 – 6,338,991 |
Length | 97 |
Max. P | 0.862072 |
Location | 6,338,894 – 6,338,991 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.83 |
Mean single sequence MFE | -24.30 |
Consensus MFE | -16.73 |
Energy contribution | -17.07 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.21 |
Structure conservation index | 0.69 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6338894 97 + 22224390 UAUU--CCUCCU--UUGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGUUGGGCCG-----------------AAAGCAGAAGCC ..((--(..(.(--(((((--(.(.(((((.((((((....)))))).((.(((((.((.....))))))).)).....))))).))))))-----------------)).)..)))... ( -31.70) >DroPse_CAF1 20787 87 + 1 UUUUUGCCUCAUUUUUUGUUGUACCACCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGCCCC--------------------------------- ....(((..((.....))..)))...((((.((((((....)))))).((.(((((.((.....))))))).)).....))))....--------------------------------- ( -17.50) >DroSec_CAF1 23368 97 + 1 UAUU--CCUCCU--UUGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAUUACGUGGUUGGGCAG-----------------AAAGCAAAAGCC ....--....((--((.((--(.(.(((((.((((((....)))))).((.(((((.((.....))))))).)).....))))).))))..-----------------))))........ ( -26.10) >DroEre_CAF1 21189 110 + 1 UAUU--CCUCUU--UCGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGUGGAA----AAAAAUAAAAAGCAAAAAAGCAAAAGGC ....--(((.((--((.((--((((((....((((((....)))))).((.(((((.((.....))))))).)).))).))))).)))----)..........((......))...))). ( -26.60) >DroYak_CAF1 19919 104 + 1 UAUU--CCGCUU--UCGGC--CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAACGAAGUACGUGGUGGAACACAAAAAAUAAAAAG----------GAAGGC ..((--((((..--...))--..(..((((.((((((....)))))).((.(((((.((.....))))))).)).....))))..).................)----------)))... ( -26.40) >DroPer_CAF1 24090 87 + 1 UUUUUGCCUCAUUUUUUGUUGUACCACCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGCCCC--------------------------------- ....(((..((.....))..)))...((((.((((((....)))))).((.(((((.((.....))))))).)).....))))....--------------------------------- ( -17.50) >consensus UAUU__CCUCAU__UUGGC__CGCUGCCACAUGCCAACAACUUGGUAAUCUUUUGCAUCAUCGAGAGCGAAUGAAGUACGUGGUCGA____________________________AAG_C .........................(((((.((((((....)))))).((.(((((.((.....))))))).)).....))))).................................... (-16.73 = -17.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:59 2006