Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,302,325 – 6,302,431 |
Length | 106 |
Max. P | 0.577010 |
Location | 6,302,325 – 6,302,431 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -27.34 |
Consensus MFE | -17.86 |
Energy contribution | -18.55 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.65 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6302325 106 - 22224390 GACAAAUAGAUUAGCCAAAAACUUGGCCACAAGGCCGAAACGAAA-GUGGUG-------------CAUUGGGGUGAGGAAAAUGUGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG (((..........(((.....(((.(((.(((.((....((....-))...)-------------).))).))).)))....(((.((.......)).)))))).((....))...))). ( -24.60) >DroSec_CAF1 34740 118 - 1 GACAAAUAGAUUAGCCAAAAACUUGGCCACAAGGCCGAAAGGAAA-GUGGCGGCAAAAGUCGCGGGGUUUGGGUG-GGAAAAUUCGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG (((.(((..(((..((....(((..(((.((...((....))...-.))(((((....)))))..)).)..))).-))..)))..)))........(..(((...)))..).....))). ( -31.30) >DroSim_CAF1 32349 118 - 1 GACAAAUAGAUUAGCCAAAAACUUGGCCAGGAGGCCGAAAGGAAA-GUGGUGGUAAAAGUCGCGGGGUUUGGGUG-GGAAAAUUCGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG (((..........((((...((((((((....)))).......))-))..))))....(((.(((.(((((....-......(((....))).......))))).)))))).....))). ( -26.44) >DroYak_CAF1 31961 110 - 1 GACAAAUAGAUUAACCAAAAACUUGGCCACAAGGCCGAAAGGGAAUGUGG---CAGCAGUCGAGGGG-----AGG-GGGAAAUUCGUUGGAAAAAGGGACAGG-ACUGGACAGGAAGUCG (((.....(......).....((((((((((...((....))...)))))---)..(((((....((-----(..-......)))(((.........)))..)-))))..))))..))). ( -27.00) >consensus GACAAAUAGAUUAGCCAAAAACUUGGCCACAAGGCCGAAAGGAAA_GUGGUG_CAAAAGUCGCGGGGUUUGGGUG_GGAAAAUUCGUUGGAAAAAGGGACAGGCACUGGACAGGAAGUCG (((...........((((....((((((....))))))..........................((((((.........)))))).))))......(..(((...)))..).....))). (-17.86 = -18.55 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:45 2006