Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,290,370 – 6,290,479 |
Length | 109 |
Max. P | 0.984137 |
Location | 6,290,370 – 6,290,479 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.86 |
Mean single sequence MFE | -35.05 |
Consensus MFE | -30.64 |
Energy contribution | -30.95 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.64 |
Structure conservation index | 0.87 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6290370 109 + 22224390 GGCUCCGGCAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAAAAAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA .((((.(((...((((((((((((((((..((((((...(....)))))))..))......(((........))))))))))))))))).((...))..))).)))).. ( -37.30) >DroSec_CAF1 27456 107 + 1 GGAUUG-CGGAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAA-AAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA ...(((-((...((((((((((((((((..((((((...(....)))))))..)).-....(((........)))))))))))))))))))))).((((....)))).. ( -36.50) >DroSim_CAF1 25379 108 + 1 GGCUCCGGCAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAA-AAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA .((((.(((...((((((((((((((((..((((((...(....)))))))..)).-....(((........))))))))))))))))).((...))..))).)))).. ( -37.30) >DroYak_CAF1 24927 108 + 1 GGCUCCGACAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGAAA-AAACGGCGACGCAGAGCCGAUUUAGAGCAGUUUUCAACGCUCACUUGAGCAA ......((....((((((((((....(((.((((((...(....))))))).))).-...((((........))))...)))))))))).))...((((....)))).. ( -29.10) >consensus GGCUCCGGCAAUGAUUGUUUUGCAUAUUUUCCUUGAAAUGGAAACUCGAGGUGGAA_AAUCGGCGAUGAAAAGCCUAUGUAGAGCAGUUUGCAACGCUCGCUUGAGCAA ............((((((((((((((((..((((((...(....)))))))..))......(((........)))))))))))))))))......((((....)))).. (-30.64 = -30.95 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006