Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,283,707 – 6,283,867 |
Length | 160 |
Max. P | 0.751328 |
Location | 6,283,707 – 6,283,827 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.70 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -25.61 |
Energy contribution | -27.17 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.74 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6283707 120 + 22224390 GGAAGCUUUUCAAGUUUAGGCCAACUAACGUAUGCCGGCAACGCUUGAAAGAUGGCCGCGAUAAUGAGAGCGGCACAUAAAACAAUCAAGGUGCCUCCACACUCCAUGGAUGGAGGGGCG .((...(((((((((...(((..((....))..)))(....))))))))))((((((((..........))))).))).......))...((.((((((..(.....)..)))))).)). ( -41.80) >DroSec_CAF1 20679 107 + 1 GGAAGCUUUUCAAGUUUAGGCCAACUAACGUAUGCCGGCAACGCUUGAAAGAUGGCCGCGAUAAUGAGAGCGGCACAUAAAACAAUCAAGGUGGCUC-------UAUGGAAGGG------ .....(((((((......(((..((....))..)))(((.((.(((((...((((((((..........))))).))).......))))))).))).-------..))))))).------ ( -31.50) >DroYak_CAF1 17774 110 + 1 GGAAGCUUUUCAAGUUUAGGCCAACUAACGUAUGCCGGCAACGUUUGAAAGAUGGCCGCGAUAAUGAGAGCGGCACAUAAAACAAUCAAGGUGGCCG-------UGCAAA---AGGGGGG .....(((..(..(((.((.....)))))...(((((((.((.(((((...((((((((..........))))).))).......))))))).))))-------.)))..---.)..))) ( -31.20) >consensus GGAAGCUUUUCAAGUUUAGGCCAACUAACGUAUGCCGGCAACGCUUGAAAGAUGGCCGCGAUAAUGAGAGCGGCACAUAAAACAAUCAAGGUGGCUC_______UAUGGA_GGAGGGG_G ((..(((((((((((...(((..((....))..)))(....))))))))).((((((((..........))))).)))...........)))..))........................ (-25.61 = -27.17 + 1.56)
Location | 6,283,747 – 6,283,867 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.38 |
Mean single sequence MFE | -20.52 |
Consensus MFE | -12.77 |
Energy contribution | -13.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.62 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6283747 120 - 22224390 CUCCCCCUCCCUCGUUCCUCUAACAGCCAAUACCCCGCCGCGCCCCUCCAUCCAUGGAGUGUGGAGGCACCUUGAUUGUUUUAUGUGCCGCUCUCAUUAUCGCGGCCAUCUUUCAAGCGU ....................................(((...((((((((....))))).).)).)))(((((((..(....(((.(((((..........)))))))))..))))).)) ( -30.00) >DroSec_CAF1 20719 93 - 1 AUCCCCC---------CCUCUAACAGCCAAUCCCC-----------CCCUUCCAUA-------GAGCCACCUUGAUUGUUUUAUGUGCCGCUCUCAUUAUCGCGGCCAUCUUUCAAGCGU .......---------.(((((.............-----------........))-------)))..(((((((..(....(((.(((((..........)))))))))..))))).)) ( -16.50) >DroYak_CAF1 17814 99 - 1 A-CCCCC---------CUUCUAGCAGCCAAUCC-CCGCCUCCCCCCU---UUUGCA-------CGGCCACCUUGAUUGUUUUAUGUGCCGCUCUCAUUAUCGCGGCCAUCUUUCAAACGU .-.....---------.....((((..(((...-..(((........---......-------.)))....)))..))))..(((.(((((..........))))))))........... ( -15.06) >consensus AUCCCCC_________CCUCUAACAGCCAAUCCCCCGCC_C_CCCCUCC_UCCAUA_______GAGCCACCUUGAUUGUUUUAUGUGCCGCUCUCAUUAUCGCGGCCAUCUUUCAAGCGU ....................................................................(((((((..(....(((.(((((..........)))))))))..))))).)) (-12.77 = -13.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:31 2006