Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,270,913 – 6,271,031 |
Length | 118 |
Max. P | 0.992867 |
Location | 6,270,913 – 6,271,031 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -37.16 |
Consensus MFE | -32.44 |
Energy contribution | -32.36 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -2.20 |
Structure conservation index | 0.87 |
SVM decision value | 2.36 |
SVM RNA-class probability | 0.992867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6270913 118 - 22224390 AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGU .((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -36.70) >DroSec_CAF1 13121 118 - 1 AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGU .((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -36.70) >DroSim_CAF1 14745 118 - 1 AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGU .((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -36.70) >DroEre_CAF1 2186 118 - 1 AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCAGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC--GGC .((((((....(((((..(((((((.......))))))).........))))))))))).(((.(((.((((((...((((((..........))))))...)))))).))).))--).. ( -37.40) >DroYak_CAF1 10264 120 - 1 AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCAGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAGUUGCGAGGGCAGGGGGC .((((((....(((((..(((((((.......))))))).........))))))))))).(.((((..((((((...((((((..........))))))...))))))..)))).).... ( -38.30) >consensus AUGAAUGGCAAAGUUAUUAUGUAGCCGCAAACGCUGCAUUCCUCUUAUUAACUUAUUCAGCGUGCCGGCGCAAUCAAUCCGUCAAUAAAUAUAGACGGGGGAAUUGCGGUGGAAC__GGU .((((((....(((((..(((((((.......))))))).........))))))))))).....(((.((((((...((((((..........))))))...)))))).)))........ (-32.44 = -32.36 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:20 2006