Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,269,856 – 6,270,077 |
Length | 221 |
Max. P | 0.995872 |
Location | 6,269,856 – 6,269,958 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -20.02 |
Energy contribution | -21.65 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.62 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6269856 102 - 22224390 CCUCUCCCAUUCGCA------------AAACCCAAUCCGAAAGCCAGGCCAACGCCCACCUUUUGCGACUGGGGCC-CGAAAACGAGGCCACUUGAAAG---CCAAGCCAGCGGAGAA ..(((((...(((((------------(((.......(....)...(((....)))....))))))))((((((((-((....)).)))).((((....---.)))))))).))))). ( -35.40) >DroSim_CAF1 13406 101 - 1 CCUCUCCCAUUCGCA------------A-UCCCAAUCCGAAAGCCAGGCCAACGCCCACCUUUUGGGUUUUGGGCC-CGAAAACGAGGCCACUUGACAG---CCAAGCCAGCGGAGAA ..((((((.((((..------------.-.(((((((((((((...(((....)))...)))))))))..))))..-)))).....(((...(((....---.)))))).).))))). ( -32.20) >DroEre_CAF1 1087 107 - 1 CCUUUCCCAUUCCCAAUCCCAUGCCC-------AAUCCAAAAGCCAGGCCAACGCCCACCUUUUGGGUUUUGGGCC-CGAAAACGAGGCCACUUGACGG---CGAAGCCGGCGUAGAA ....................(((((.-------...(((((((...(((....)))...)))))))(((..(((((-((....)).)))).)..)))((---(...)))))))).... ( -32.50) >DroYak_CAF1 9255 118 - 1 CCUUGUCCAUUCCCAUUCCCAUUCCCAUUGCCAAAGCAAAAAGCCAGGCCAACGCCCACCUUUUGGGUUCUCGGCCCCAAAAACGAGGCCACUUGACAGCCGCCAAGCCAGCGGAGAA ..(((((................((((((((....))))((((...(((....)))...)))))))).....((((.(......).))))....)))))((((.......)))).... ( -28.20) >consensus CCUCUCCCAUUCCCA____________A__CCCAAUCCAAAAGCCAGGCCAACGCCCACCUUUUGGGUUUUGGGCC_CGAAAACGAGGCCACUUGACAG___CCAAGCCAGCGGAGAA ..((((((.........................((((((((((...(((....)))...))))))))))...((((.((....)).)))).((((........))))...).))))). (-20.02 = -21.65 + 1.63)
Location | 6,269,892 – 6,269,998 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 72.81 |
Mean single sequence MFE | -30.15 |
Consensus MFE | -19.86 |
Energy contribution | -20.43 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.10 |
Structure conservation index | 0.66 |
SVM decision value | 2.30 |
SVM RNA-class probability | 0.992014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6269892 106 - 22224390 GUCGCCAUGGGCGUGGCUUCCCCCUACCGCUUACCAUUCACCUCUCCCAUUCGCA------------AAACCCAAUCCGAAAGCCAGGCCAACGCCCACCUUUUGCGACUGGGGCC-CG ........((((((((..........))))...............((((.(((((------------(((.......(....)...(((....)))....)))))))).)))))))-). ( -32.30) >DroSim_CAF1 13442 105 - 1 GUCGCCAUGGGCGUGGCUUCCCCCUACCGCUUCCCAUUCACCUCUCCCAUUCGCA------------A-UCCCAAUCCGAAAGCCAGGCCAACGCCCACCUUUUGGGUUUUGGGCC-CG ........((((((((..........)))).........................------------.-..((((((((((((...(((....)))...)))))))))..))))))-). ( -28.10) >DroEre_CAF1 1123 110 - 1 GCCGCCAUAGGCGUGGUUUCCCCUUACCGAUU-CCAUACACCUUUCCCAUUCCCAAUCCCAUGCCC-------AAUCCAAAAGCCAGGCCAACGCCCACCUUUUGGGUUUUGGGCC-CG (((......)))((((..((........))..-)))).........................((((-------((((((((((...(((....)))...)))))))))..))))).-.. ( -32.40) >DroYak_CAF1 9294 107 - 1 ACCGCCAUGGGCGUGGCUG-----------UC-CCAUACACCUUGUCCAUUCCCAUUCCCAUUCCCAUUGCCAAAGCAAAAAGCCAGGCCAACGCCCACCUUUUGGGUUCUCGGCCCCA ...(((...(((.((((((-----------(.-....))............................((((....))))..))))).)))...(((((.....)))))....))).... ( -27.80) >consensus GCCGCCAUGGGCGUGGCUUCCCCCUACCGCUU_CCAUACACCUCUCCCAUUCCCA____________A__CCCAAUCCAAAAGCCAGGCCAACGCCCACCUUUUGGGUUUUGGGCC_CG ...(((...(((.((((((.............................................................)))))).)))...(((((.....)))))....))).... (-19.86 = -20.43 + 0.56)
Location | 6,269,930 – 6,270,037 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 74.78 |
Mean single sequence MFE | -19.79 |
Consensus MFE | -18.09 |
Energy contribution | -17.87 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -1.36 |
Structure conservation index | 0.91 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6269930 107 - 22224390 CCUCAAGUUUUCUUAGCCGCACACCGCAAAACGCCCGCAGUCGCCAUGGGCGUGGCUUCCCCCUACCGCUUACCAUUCACCUCUCCCAUUCGCA------------AAACCCAAUCCGA ......(((((...((((((.....))...((((((((....))...))))))))))..........((......................)))------------))))......... ( -18.85) >DroSim_CAF1 13480 106 - 1 CCUCAAGUUUUCUUAGCCGCACACCGCAAAACGCCCACAGUCGCCAUGGGCGUGGCUUCCCCCUACCGCUUCCCAUUCACCUCUCCCAUUCGCA------------A-UCCCAAUCCGA ......((......((((((.....))...(((((((.........))))))))))).......))............................------------.-........... ( -18.02) >DroYak_CAF1 9333 107 - 1 CCUCAAGUUUUCUUAGCCGCAUACCGCAAAACGCCCACAACCGCCAUGGGCGUGGCUG-----------UC-CCAUACACCUUGUCCAUUCCCAUUCCCAUUCCCAUUGCCAAAGCAAA ......((.....(((((((.....))...(((((((.........))))))))))))-----------..-....))............................((((....)))). ( -22.50) >consensus CCUCAAGUUUUCUUAGCCGCACACCGCAAAACGCCCACAGUCGCCAUGGGCGUGGCUUCCCCCUACCGCUU_CCAUUCACCUCUCCCAUUCGCA____________A_ACCCAAUCCGA ..............((((((.....))...(((((((.........))))))))))).............................................................. (-18.09 = -17.87 + -0.22)
Location | 6,269,958 – 6,270,077 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.66 |
Mean single sequence MFE | -23.09 |
Consensus MFE | -19.75 |
Energy contribution | -19.62 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.63 |
Structure conservation index | 0.86 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6269958 119 - 22224390 CGCACACUUAACUCAAGUUUCAUUCAAUUAUUGUUAAGCACCUCAAGUUUUCUUAGCCGCACACCGCAAA-ACGCCCGCAGUCGCCAUGGGCGUGGCUUCCCCCUACCGCUUACCAUUCA .((...((((((...((((......))))...))))))........((......((((((.....))...-((((((((....))...)))))))))).......)).)).......... ( -24.52) >DroSim_CAF1 13507 119 - 1 CGCACACUUAACUCAAGUUUCAUUCAAUUAUUGUUAAGCACCUCAAGUUUUCUUAGCCGCACACCGCAAA-ACGCCCACAGUCGCCAUGGGCGUGGCUUCCCCCUACCGCUUCCCAUUCA .((...((((((...((((......))))...))))))........((......((((((.....))...-(((((((.........))))))))))).......)).)).......... ( -24.22) >DroEre_CAF1 1194 119 - 1 CGCACACUUAACUCAAGUUUCAUUCAAUUAUUGUUAAGCACCUCAAGUUUUCUUAGCCGCACACCGCAAAGACGCCCACAGCCGCCAUAGGCGUGGUUUCCCCUUACCGAUU-CCAUACA .((...((((((...((((......))))...))))))............((((.((........)).)))).))((((.(((......)))))))................-....... ( -19.60) >DroYak_CAF1 9373 107 - 1 CGCACACUUAACUCAAGUUUCAUUCAAUUAUUGUUAAGCACCUCAAGUUUUCUUAGCCGCAUACCGCAAA-ACGCCCACAACCGCCAUGGGCGUGGCUG-----------UC-CCAUACA ......((((((...((((......))))...))))))........((.....(((((((.....))...-(((((((.........))))))))))))-----------..-....)). ( -24.00) >consensus CGCACACUUAACUCAAGUUUCAUUCAAUUAUUGUUAAGCACCUCAAGUUUUCUUAGCCGCACACCGCAAA_ACGCCCACAGCCGCCAUGGGCGUGGCUUCCCCCUACCGCUU_CCAUACA ......((((((...((((......))))...))))))................((((((.....))....(((((((.........)))))))))))...................... (-19.75 = -19.62 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:16 2006