Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,261,909 – 6,262,029 |
Length | 120 |
Max. P | 0.952209 |
Location | 6,261,909 – 6,262,029 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -35.43 |
Consensus MFE | -33.92 |
Energy contribution | -34.43 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.96 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6261909 120 + 22224390 CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAACGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCAUCAGG (((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). ( -35.70) >DroSec_CAF1 3583 120 + 1 CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAAAGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCUUCAGG (((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). ( -35.70) >DroSim_CAF1 3517 120 + 1 CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAACGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCUUCAGG (((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). ( -35.70) >DroYak_CAF1 3046 119 + 1 CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAUCACAACUUGAGGCAACUUUUUGCCCGCCAGCUCUCUUCAUUUGUAUGCCUGCU-CGUCCUUCAGG (((.....(((...(((.(((((..((..((((..((.....))(((((((((.(((.....)))(((((....))))).).))))))))))))..))))))).))).-.)))...))). ( -34.60) >consensus CUGUUUUCGGCUCUGCACGCAUAUUCAUUUGGAACGACUUCAUCGGGAGCUGCAACGCAACUUCAGGCAACUUUUUGCCUGCCAGCUCUCUUCAUUUGUAUGCCUGCUUCGUCCUUCAGG (((.....(((...(((.(((((..((..((((..((.....))((((((((...........(((((((....))))))).))))))))))))..))))))).)))...)))...))). (-33.92 = -34.43 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006