Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,234,321 – 6,234,433 |
Length | 112 |
Max. P | 0.982663 |
Location | 6,234,321 – 6,234,433 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.43 |
Mean single sequence MFE | -36.64 |
Consensus MFE | -19.28 |
Energy contribution | -20.16 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.18 |
Mean z-score | -2.70 |
Structure conservation index | 0.53 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6234321 112 - 22224390 A---CCAGAU----GUACUGGCAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCUGCAAAUGAAUAAAUGAGCCGAGGCAGGCGAAAGCCACCGCCGGUUGCGCCUUUU-GGGA .---((((..----...))))((((((.((.......(((((((..((....))..))))))).............(((((.((..(((....))).))..))))).)).)))))-)... ( -36.60) >DroSec_CAF1 7313 110 - 1 ----CCAGAU----GUACUGGGAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCGCCUUUC--GGA ----((((..----...))))((((((.((.....((((((................(((.((..((......))...))...)))(((....))).))))))....))))))))--... ( -39.20) >DroSim_CAF1 10596 110 - 1 ----CCAGAU----GUACUGGGAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCGCCUUUC--GGA ----((((..----...))))((((((.((.....((((((................(((.((..((......))...))...)))(((....))).))))))....))))))))--... ( -39.20) >DroEre_CAF1 1950 100 - 1 GCAACAGCAAGGAAGG-----------ACGAGGAAUGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGG---------CGAAAGCCACCGCUGGCCGCGCCUUUCUCCAU ((....)).(((((((-----------.((.((...(((((..........(((....)))................((---------(....))).)))))..)).))))))))).... ( -31.40) >DroYak_CAF1 14823 113 - 1 ----CAACAAGGAAGGAC-GAGGAGGGACGAGAAAUGGCGGCGAAAGCGAGUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCUCCUUGC--GGA ----...........(.(-((((((.(((.((...((((.((....))(..(((..((((..((..........))..)))).)))..)....))))...)).))).))))))))--... ( -36.80) >consensus ____CCAGAU____GUACUGGGAAAGGACGAGGAACGGCGGCGAAAACGAAUGUAAUUGCAGCAAAUGAAUAAAUGAGGCGAGGCAGGCGAAAGCCACCGCUGGUUGCGCCUUUC__GGA .............................((((..((((((((..............(((.((..((......))...))...)))(((....)))..)))).))))..))))....... (-19.28 = -20.16 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:03 2006