Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 796,423 – 796,522 |
Length | 99 |
Max. P | 0.898278 |
Location | 796,423 – 796,522 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 72.51 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -16.64 |
Energy contribution | -17.92 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.24 |
Mean z-score | -1.88 |
Structure conservation index | 0.51 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 796423 99 - 22224390 C-ACUG------CAGGGUCUU---AACUAUUUCAGGACCCACCGCCGCACACUGGAAACAGCAUUUUCCUAAUGGCACCUAGUCUGGUGCCCGAGUCGGCGGAAAUCGA .-....------..(((((((---.........))))))).((((((.((.(((....)))............((((((......))))))...))))))))....... ( -40.80) >DroSec_CAF1 3215 99 - 1 U-ACUG------CAGGGCCUU---AACUAUUUCAGGACCCACCGAUGCUCACUGGAAACAGCAUUUUCUUAAUGGCACCUAGUCUGGUGCCCCAGUCGGUGGAGAACGA .-.((.------(.((((((.---((....)).))).)))((((((.....(((....)))............((((((......))))))...))))))).))..... ( -33.80) >DroSim_CAF1 3226 99 - 1 U-ACUG------CAGGGCCCU---AACUAUUUCAGGACCCACCACCGCUCACUGGAAACAGCAUUUUCUUAAUGGCACCUAGUCUGGUGCCCCAGUCGGCGGAGAACGA .-....------..(((.(((---.........))).)))....(((((.(((((.......(((.....)))((((((......))))))))))).)))))....... ( -34.40) >DroEre_CAF1 131 99 - 1 C-ACUG------CAGGGCCUU---CACUAUUCUAGGAUCCACCGCCGAACUCCGGAAACAGCGUGUUUCUAAUGGCGCCUGGCCUGGUGCCCCAAUUAGCGGAAAAUGA .-....------..((((((.---.........))).))).((((..(.....((((((.....))))))...((((((......))))))....)..))))....... ( -29.20) >DroYak_CAF1 2729 105 - 1 U-ACUGGUACUACAGGGCCUU---ACCUAUUUUAGGACCCACCGCCGAACUCCGGGAACAGCGUGUUUCUAAUGGCACCAGGUCUGGUGCCCCAGGCAGCGGAAAAUGA .-.(((((......((((((.---.........))).)))...((((......((((((.....))))))..))))))))).((((.((((...)))).))))...... ( -34.30) >DroMoj_CAF1 140 94 - 1 UAAUUG------CAAUUUCUCUAUAC---UUGCAGGAUCCAAAGACCAACUCAGAGAACAGUGUAUAUCUUAUGGCACCGAGCCUAGUGCCGGUG------CAAAUGGA ....((------((..((((((....---..(..((.((....))))..)..))))))...))))..(((....((((((.((.....)))))))------)....))) ( -21.90) >consensus U_ACUG______CAGGGCCUU___AACUAUUUCAGGACCCACCGCCGAACACUGGAAACAGCAUUUUCCUAAUGGCACCUAGUCUGGUGCCCCAGUCGGCGGAAAACGA ..............((((((.............))).))).((((........(....)..............((((((......)))))).......))))....... (-16.64 = -17.92 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:28 2006