Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,184,678 – 6,184,785 |
Length | 107 |
Max. P | 0.837867 |
Location | 6,184,678 – 6,184,785 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.46 |
Mean single sequence MFE | -24.89 |
Consensus MFE | -15.54 |
Energy contribution | -15.10 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.28 |
Mean z-score | -1.55 |
Structure conservation index | 0.62 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6184678 107 + 22224390 AU-AAGCCGCUGAAUGGGAUCCUCUAUAAAAAGUAGAGAUGCCUAAGCAUACGCUCACUCACUGUGCUAUUUAAAGGCAGAC----GAGCACGUCUUUAAAA-A------CG-UCUUUUU ..-..((((((....((.(((.(((((.....)))))))).))..)))....((.((.....)).))........)))((((----(....)))))......-.------..-....... ( -26.10) >DroSec_CAF1 10952 114 + 1 AU-AAGCCGCUGAACGAGAUCCUCUAUAAAAAGUAGAGAUGCUUAAGCAUACUC----UCACUGUGCUAUUUAAAGGCAGACAGACGGGCACAUCUCUAAAA-AAUAAGGCGUUCUGCUU ..-.....((.((((((((..((((((.....))))))((((....))))..))----))..((((((.......(.....).....)))))).........-........)))).)).. ( -26.40) >DroSim_CAF1 12044 93 + 1 AU-AAGCCACUGAACGAGAUCCUCUAUAAAAAGUAGAGAUGCUUAAGUACACUC----UCACUGUGCUAUUUAAAGGCAGACAGACG----------------------GCGUUCUUCUU ..-..(((.(((.........((((((.....)))))).(((((((((((((..----.....))).))))))..))))..)))..)----------------------))......... ( -21.90) >DroEre_CAF1 11155 112 + 1 AUUAAGCCACUGAAUGAGAUCCCCUAUAAAAUGUAGAGAUGCCUAGGCAUAUAU----UUAUUAUGCCAAUUAAAAGCAGACGG----GUAUGUCUUUAAGAAAAUAAGGUGGAUUAUUC ...........((((..((((((((.........(((.((((((.((((((...----....))))))........(....)))----)))).)))...........))).))))))))) ( -25.15) >consensus AU_AAGCCACUGAACGAGAUCCUCUAUAAAAAGUAGAGAUGCCUAAGCAUACUC____UCACUGUGCUAUUUAAAGGCAGACAG__G_GCACGUCUUUAAAA_A_____GCGUUCUUCUU .....(((.......(((...((((((.....))))))...))).((((((...........)))))).......))).......................................... (-15.54 = -15.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:39 2006