Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,164,787 – 6,164,892 |
Length | 105 |
Max. P | 0.690374 |
Location | 6,164,787 – 6,164,892 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.02 |
Mean single sequence MFE | -19.23 |
Consensus MFE | -14.70 |
Energy contribution | -15.20 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.76 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6164787 105 + 22224390 CAGGACACUUCAGUGCAAGGAUAAAACCCAAAAAAAAAAAAAAAUCCCCCUUUAAUUAUGAGGGGCAACCUCUGGCAAACAAUUGCGGCCACAUGAAGACAAAGC .......(((((((((..((.......)).................((((((.......)))))).........((((....)))).).))).)))))....... ( -20.50) >DroSec_CAF1 3387 99 + 1 CAGGACACUUCAGUGCAAGGAUAAAACCCAAA-AAAGCAAAA-----CCCUUUAAUUAUGAGGGGCAACCUCUGGCAAACAAUUGCGGCCACACGAAGACAAAGC .......((((.(((...((.......))...-...((((..-----(((((.......)))))((........))......)))).....)))))))....... ( -18.90) >DroSim_CAF1 5733 100 + 1 CAGGACACUUCAGUGCAAGGAUAAAACCCAAAAAAAGCAAAA-----CCCUUUAAUUAUGAGGGCCAACCUCUGGCAAACAAUUGCGGCCACAUGAAGACAAAGC .......(((((((((..((.......)).......((((..-----.((((.......))))((((.....))))......)))).).))).)))))....... ( -22.10) >DroYak_CAF1 9081 86 + 1 ------ACUUCAGUGCAAGGAUAAACCAAAAA--------AA-----AAAUUUAAUUAUGAGGGGUAACCUCUGGCAAACAAUGGCGGCCACAUGAAGACAAAGC ------.(((((((((..((.....)).....--------..-----............((((.....))))..((........)).).))).)))))....... ( -15.40) >consensus CAGGACACUUCAGUGCAAGGAUAAAACCCAAA_AAAGCAAAA_____CCCUUUAAUUAUGAGGGGCAACCUCUGGCAAACAAUUGCGGCCACAUGAAGACAAAGC .......(((((((((...........................................((((.....))))..((((....)))).).))).)))))....... (-14.70 = -15.20 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:29 2006