Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,109,386 – 6,109,489 |
Length | 103 |
Max. P | 0.881797 |
Location | 6,109,386 – 6,109,489 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 73.91 |
Mean single sequence MFE | -30.64 |
Consensus MFE | -20.90 |
Energy contribution | -22.70 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.68 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6109386 103 + 22224390 GCGCCGCCAAUCGGGCCAUAAAGUGCGCACAUAUUUGGAAAAACUUUUCGAGUCAAUGACUCACUUGGCG-GGCCAAGUGAGUUUUGGCCAGGCCCGCCAAUGA- ...........((((((..(((((.....((....)).....)))))..(.(((((.(((((((((((..-..))))))))))))))))).)))))).......- ( -38.80) >DroSec_CAF1 5824 98 + 1 GCG---CCAAUCGGGCCAUAAAGUGCGCACAUAUUUGG-AAAACUUCUCGAGUCAAUGACUCACUCGGCG-AGCCAAGUGA-UUUUGGCCAGGCCCGCCAAGGA- ...---((...((((((........(((.((....)).-..........(((((...))))).....)))-.((((((...-.))))))..))))))....)).- ( -30.70) >DroSim_CAF1 5576 98 + 1 NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNAGUCAAUGACUCACUCGGCG-AGCCAAGUGA-UUUUGGCCAGGCCCGCCAAGGA- ...---................................-............(((...)))(((((.((..-..)).)))))-(((((((.......))))))).- ( -14.70) >DroEre_CAF1 6825 99 + 1 GCG---CCAAUCGGGCCAUAAAGUGCGCACAUAUUUGGAAAAACUUCUCGAGUCAAUGACUCAUU-GUCGGGGCCAAGUGC-UUUUGGCCAGGCCCGCAAAGGG- ...---((...((((((........((.(((.....((((....)))).(((((...)))))..)-)))).(((((((...-.))))))).))))))....)).- ( -33.90) >DroYak_CAF1 5862 99 + 1 GCG---CCAAUCGGGCCAUAAAGUGCGCACAUAUUUGGAAAAACUUCUCGAGUCAAUGACUCACU-GGCG-GGCCAAGUGC-UUUUGGCCAGGCCCGCAAAAGGA ...---((...((((((........(((.((.....((((....)))).(((((...)))))..)-))))-(((((((...-.))))))).)))))).....)). ( -35.10) >consensus GCG___CCAAUCGGGCCAUAAAGUGCGCACAUAUUUGGAAAAACUUCUCGAGUCAAUGACUCACU_GGCG_GGCCAAGUGA_UUUUGGCCAGGCCCGCCAAGGA_ ...........((((((................................(((((...))))).........(((((((.....))))))).))))))........ (-20.90 = -22.70 + 1.80)
Location | 6,109,386 – 6,109,489 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 73.91 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -19.94 |
Energy contribution | -21.10 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.34 |
Structure conservation index | 0.66 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6109386 103 - 22224390 -UCAUUGGCGGGCCUGGCCAAAACUCACUUGGCC-CGCCAAGUGAGUCAUUGACUCGAAAAGUUUUUCCAAAUAUGUGCGCACUUUAUGGCCCGAUUGGCGGCGC -...((((((((((.((..........)).))))-)))))).((((((...))))))....................((((.(.....)(((.....))).)))) ( -35.00) >DroSec_CAF1 5824 98 - 1 -UCCUUGGCGGGCCUGGCCAAAA-UCACUUGGCU-CGCCGAGUGAGUCAUUGACUCGAGAAGUUUU-CCAAAUAUGUGCGCACUUUAUGGCCCGAUUGG---CGC -..(((((((((((.((......-...)).))))-)))))))((((((...)))))).(((((...-(((....)).)...)))))...(((.....))---).. ( -30.30) >DroSim_CAF1 5576 98 - 1 -UCCUUGGCGGGCCUGGCCAAAA-UCACUUGGCU-CGCCGAGUGAGUCAUUGACUNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNN -(((((((((((((.((......-...)).))))-))))))).))(((...)))............-................................---... ( -22.40) >DroEre_CAF1 6825 99 - 1 -CCCUUUGCGGGCCUGGCCAAAA-GCACUUGGCCCCGAC-AAUGAGUCAUUGACUCGAGAAGUUUUUCCAAAUAUGUGCGCACUUUAUGGCCCGAUUGG---CGC -.((....((((((.((((((..-....)))))).((((-(..(((((...)))))((((....))))......))).))........))))))...))---... ( -31.50) >DroYak_CAF1 5862 99 - 1 UCCUUUUGCGGGCCUGGCCAAAA-GCACUUGGCC-CGCC-AGUGAGUCAUUGACUCGAGAAGUUUUUCCAAAUAUGUGCGCACUUUAUGGCCCGAUUGG---CGC .((.....((((((.((((((..-....))))))-((((-(..(((((...)))))((((....))))......)).)))........))))))...))---... ( -32.80) >consensus _UCCUUGGCGGGCCUGGCCAAAA_UCACUUGGCC_CGCC_AGUGAGUCAUUGACUCGAGAAGUUUUUCCAAAUAUGUGCGCACUUUAUGGCCCGAUUGG___CGC ........((((((.((((((.......)))))).........(((((...)))))................................))))))........... (-19.94 = -21.10 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:54 2006