Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,067,062 – 6,067,182 |
Length | 120 |
Max. P | 0.546896 |
Location | 6,067,062 – 6,067,182 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -41.72 |
Consensus MFE | -29.37 |
Energy contribution | -29.27 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.30 |
Mean z-score | -1.52 |
Structure conservation index | 0.70 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6067062 120 + 22224390 AUACACAUCACAGCCUCAAGGUGGAUACAUCCUACUCCGAUUUCUUCUGGUGGACGGUGGGUAUUGGCUUGCUGACAAUCGCCCUGCUGGUCACCGCCUACAUGGGCAUCUACCAGGAGG ......(((...(((....)))(((....)))......)))..((((((((((((((..(((....)))..)))......((((((..(((....)))..)).)))).))))))))))). ( -43.00) >DroGri_CAF1 4169 120 + 1 AUACGCAUCACUCACUGAAAGUGGACACCACCUACUCGGACUUCUUCUGGUGGAGCGUCGGCAUCGCUCUGCUCACGAUUGCCCUACUCGUGACCGCUUACAUGGGCAUCUACCAGGAGG ..............((((..((((...))))....))))....(((((((((((.(((.((((......)))).)))..(((((.....((((....))))..)))))))))))))))). ( -38.40) >DroEre_CAF1 13124 120 + 1 ACACCCAUCACAGCCUCAAGGUGGAUACCUCCUACUCUGAAUUCUUCUGGUGGACGGUGGGCAUUGGUUUGCUGACGAUCGCCCUGCUGGUCACCGCCUACAUGGGCAUCUACCAGGAGG .............((((..(((((((......................((((..((((((((..(.(((....))).)..)))).))))..))))((((....)))))))))))..)))) ( -44.20) >DroWil_CAF1 14137 120 + 1 ACACACAUCCCACCCUAAAAGUUGAGACAUCUUUCUCCGACUUCUUCUGGUGGUCGGUGGGCAUUGCCCUGUUAACAAUUGCCCUGCUGGUGACCGCCUAUAUGGGCAUCUAUCAAGAAG ...(((...(((((....(((((((((......))).)))))).....))))).((((((((((((.........))).))))).)))))))...((((....))))............. ( -34.80) >DroYak_CAF1 455 120 + 1 AUACCCAUCACAGCCUCAAGGUGGAUACCUCCUAUUCCGACUUCUUCUGGUGGUCGGUGGGCAUCGGUUUGCUGACCAUCGCCCUGCUGGUCACCGCGUACAUGGGCAUCUACCAGGAGG .............((((..(((((((......................(((((((((..(((....)))..)))))))))((((((((((...))).)))...)))))))))))..)))) ( -45.60) >DroAna_CAF1 4895 120 + 1 ACACCCACCAUUCACUGCGGGUGGAGACCUCAUAUUCGGACUUCUUCUGGUGGUCGGUGGGCAUUGCCCUGUUGACGAUCGCCCUGCUGGUUACCGCCUACAUGGGCAUCUAUCAGGAGG ...((((((.(((((.....)))))((((......(((((.....))))).))))))))))......(((.((((.(((.((((((..(((....)))..)).)))))))..)))).))) ( -44.30) >consensus ACACCCAUCACACCCUCAAGGUGGAUACCUCCUACUCCGACUUCUUCUGGUGGACGGUGGGCAUUGCCCUGCUGACGAUCGCCCUGCUGGUCACCGCCUACAUGGGCAUCUACCAGGAGG .......((((.........))))...................((((((((((.((((((((((((.........)))).)))).))))......((((....))))..)))))))))). (-29.37 = -29.27 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:44 2006