Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 783,953 – 784,053 |
Length | 100 |
Max. P | 0.883886 |
Location | 783,953 – 784,053 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 75.27 |
Mean single sequence MFE | -37.63 |
Consensus MFE | -24.23 |
Energy contribution | -25.50 |
Covariance contribution | 1.27 |
Combinations/Pair | 1.27 |
Mean z-score | -1.58 |
Structure conservation index | 0.64 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 783953 100 + 22224390 GGCAGCU-GCCAUACAAGCGGGGCAAUAAAGGAUCCCGGCAGGAGUGCUGCCACCGCUGAUGUUGGCUAAUCCUCU------------GUCCCUGUCGCGAUCCCGCUCAAAU (((((((-........)))((((((....(((((.((((((..((((.......))))..))))))...))))).)------------)))))))))(((....)))...... ( -34.70) >DroVir_CAF1 164877 80 + 1 AGCUGUUUGCUACGCAUGCGGGACAAAACACGGA---GGCUGGUGUGCUACCACCGCUAGUACUCCCACUCCCACU------------GCCACUG------------------ (((.....)))..(((.(.((((........(((---((((((((((....)).))))))).))))...)))).))------------)).....------------------ ( -23.30) >DroSec_CAF1 99541 100 + 1 GGCAGCU-GCCAUACAGGCGGGGCAAUAGAGGAUUCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCU------------GUCCCUGUCGCGAUCCCGCUCAAAU (((....-))).....(((((((..(((((((((((((((((.((((.......)))).)))))))..))))))))------------)))))))))(((....)))...... ( -47.60) >DroSim_CAF1 60809 100 + 1 GGCAGCU-GCCAUACAGGCGGGGCAAUAGAGGAUCCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCU------------GUCCCUGUCGCGAUCCCGCUCAAAU (((....-))).....(((((((..(((((((((.(((((((.((((.......)))).)))))))...)))))))------------)))))))))(((....)))...... ( -46.60) >DroEre_CAF1 112327 100 + 1 GGCAGCU-GCCACACAGGCGGGGCAAUAGAGAAUUUCGGCAGGAGUGCUGGCUCCACUGCUGUUGGCCAGUCCUCU------------GUCCCUGUCGCGAUCCCGUUCAAAU (((....-))).....(((((((..((((((.((((((((((.((((.......)))).)))))))..))).))))------------)))))))))(((....)))...... ( -36.40) >DroYak_CAF1 100179 112 + 1 GGCAGCU-GCCACACACGCGGGGCAAUAGAGAAUUCCGGCAGGAGUGCUGCCUCCACUGCUGUUGGCCAAUCCUCUGUCUCUCUCUCUGUCCCUGUCGCGAUCCCGCUCAAAU (((....-)))....(((.((((((((((((.((((((((((.((((.......)))).)))))))..))).)))))).........))))))))).(((....)))...... ( -37.20) >consensus GGCAGCU_GCCACACAGGCGGGGCAAUAGAGGAUUCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCU____________GUCCCUGUCGCGAUCCCGCUCAAAU (((.....)))......((((((....(((((((.(((((((.((((.......)))).)))))))...)))))))..............)))))).(((....)))...... (-24.23 = -25.50 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006