Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,050,295 – 6,050,408 |
Length | 113 |
Max. P | 0.613524 |
Location | 6,050,295 – 6,050,408 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.08 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -21.04 |
Energy contribution | -22.65 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.10 |
Mean z-score | -2.00 |
Structure conservation index | 0.74 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6050295 113 - 22224390 UGUGUGUUUG---GUUGUGUGUGUGGAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA ..........---......(((((....((((((((.--.....((((--..((((((((((......)))))))).((.....))..))....)))).....))))))))...))))). ( -30.50) >DroVir_CAF1 88361 97 - 1 UAUA---A------------------AC--ACGUGCAUCUGUAUAGUUGGGGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACAAAGCUUAAACAUAA ....---.------------------.(--(((.((..(((......)))..))((((((((......)))))))).........))))....((((((.......))))))........ ( -18.20) >DroSec_CAF1 62324 106 - 1 UGUGUGCU-------UGUGUGU---GAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA ........-------..(((((---...((((((((.--.....((((--..((((((((((......)))))))).((.....))..))....)))).....))))))))...))))). ( -31.20) >DroEre_CAF1 58280 110 - 1 UGUGUGUUUG---GUUGUGUGU---GAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA ..(((((((.---....((..(---(((..((((...--.((((....--))))((((((((......)))))))).))))..))))..))..((((((.......))))))))))))). ( -33.10) >DroYak_CAF1 60332 110 - 1 UGUGUGUGUG---GUUGUGUGU---GAUGACUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA ....(((((.---....((..(---(((..((((...--.((((....--))))((((((((......)))))))).))))..))))..))..((((((.......))))))..))))). ( -30.00) >DroAna_CAF1 65450 113 - 1 UUUUCUUUCAGUGCAUUUUUGU---GAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA ...................(((---...((((((((.--.....((((--..((((((((((......)))))))).((.....))..))....)))).....))))))))...)))... ( -28.60) >consensus UGUGUGUUUG___GUUGUGUGU___GAUGGCUUCGUU__CGUCUGGCU__GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA .................(((((......((((((((........((((....((((((((((......)))))))).((.....))..))....)))).....))))))))...))))). (-21.04 = -22.65 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006