Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,044,833 – 6,044,953 |
Length | 120 |
Max. P | 0.569774 |
Location | 6,044,833 – 6,044,953 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -18.38 |
Energy contribution | -19.70 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.11 |
Mean z-score | -2.10 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6044833 120 - 22224390 AUCGAUGCAGAAGUUACAAAGAAACUAAAAAGUUUUUUGGAAAACUUCACCGGUUACUGGAAGGAUAACACCGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU ...(((((.((((((...((((((((....))))))))....)))))).((((...))))..((......))........(((.((((((.....)))))).)))))))).......... ( -27.10) >DroSec_CAF1 56882 120 - 1 AUCGAUGCAGAAGUGACACUGAAAUUAAAAAGUUUUUUGGAGAACUUCAGCGGUUACUGGAAGGAUAACACGGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU ...(((((...((((((.((((........((((((....))))))))))..))))))....(((.(((.....))))))(((.((((((.....)))))).)))))))).......... ( -23.80) >DroSim_CAF1 52765 120 - 1 AUCGAUGCAGAAGUGACACAGAAACUAAAAAGUUUUUUGGAGAACUUCAGCGGUUACUGGAAGGAUAACACGGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU ...(((((.(((((..((.(((((((....)))))))))....)))))..((((((((....)).)))).))........(((.((((((.....)))))).)))))))).......... ( -26.30) >DroEre_CAF1 53013 111 - 1 AUCAAUGCAGCAGUGACGAAGAAACUGAAAAGUUUUUUGGAUAACUUC---------CGGAAGAAUAACACCGAGGUUCUCAACUGGAUUCCAAGAAUCCGUAUGGCAUUGAAUAGUAAU .(((((((.(((((....((((((((....)))))))).((.((((((---------.((..........)))))))).)).)))((((((...))))))))...)))))))........ ( -30.90) >DroYak_CAF1 54778 120 - 1 AUCGAUGGAGAAGUGACGAAGAAACUAAAAAGUUUCUUGGAGAACUUCAGUGGAAACUGGAAGGAUAACACCGAGUUUCUCAACUGGAUUUCAAAAAUACGCACGGCAUUGAAUAAUAAU .((((((.....(((.((((((((((....))))))))...(((.(((((((((((((.(..(.....)..).)))))))..)))))).))).......)))))..))))))........ ( -32.80) >consensus AUCGAUGCAGAAGUGACAAAGAAACUAAAAAGUUUUUUGGAGAACUUCAGCGGUUACUGGAAGGAUAACACCGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU ...(((((.(((((..(.((((((((....)))))))).)...)))))................................(((.((((((.....)))))).)))))))).......... (-18.38 = -19.70 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:28 2006